Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1363 ATGGTCTCTCCTAAGCACGAGCCTGTTCCGTCACATTCCCTCACTCACACCAACGGTCATTTCTCCATCATGCTTAAACTCCTGAACAAGAACCTCGGTCGCCTCAGCTGCCACCTCCGGTGGCCACTACGGCTTCGTTCCAAGTCCAAGCTTCGGTTCGGCAAGCCCACTCCTAAACCTCACACCGAACCAAGCAGCAGCACCCCCGAAGCTCCTCCTCCCAAACCAATACGAATCGCAACGTTCAACGCCGCACTCTTCTCCATGGCGCCGGTGCTTCCCGAAGCAGACAAAATCGCTGCCTCACACGACAACGTAGGACGAGCGAAGTCACTGTACGAGCGACCACGAAGCATTCTGAAACAGTCGCAGTCTCCGCTGCTGGGCAAGTCGAAGCTGAGAGTGTCGATCAACTTACCTGACAACGAGATTTCGCTGCGGCAAGCGAGCTTCACGAAACACGAGAGAAAAGGGTCGTTGTCGTGGTCGTGGAGTTTCGGCGAGGGAGTAAAAGAGAGGCAGAGAAAAACGGTGGTTGAAGTGCTTAGAGACTTAAACGCCGACGTTTTGGGTTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCTGATTTGGCTCAGGCTCTGGGGATGAACTACGTCTTCGCCGAAAGCTGGGCTCCTCAATACGGCAACGCCGTTTTGTCCAAGTGGCCCATCAAACGCTGGAAACTACAGAAAATCTTTGACAAAACCGATTTCAGGAATGTTCTGAAGGCAACTATCGATGTACCCCAAGAAGGTGAACTCCACTTTTACTGCACCCACCTTGATCATCTCGATGAGAATTGGAGAATGAAGCAGATAAATGCAATAATTCAATCTAATGATGAGCCACACATTTTAGCTGGAGGCCTTAATTCGCTCGATGAATCAGATTATTCCCAAGAAAGATGGACAGATATTGTAAAGTACTACGAAGAGATGGGAAAGCCAACACCGAAGGTTGAAGTGATGAAATATCTCAAGAGCAGACACTACACGGACGCTAAGGACTTTGCAGGGGAATGTGAGTCCGTTGTCATGATTGCCAAAGGACAAAGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGTAAAAGTAAATAGTAACCCTCAAGAAAATCTGACAAAGAAGCAGCGACAACCAAGACAGAAAATTGTAAGAATAAAATCAGCTCCATCGAAATGTATATGGAAAACACACACTGGAGATATAGATTGA 1257 0.4829 MVSPKHEPVPSHSLTHTNGHFSIMLKLLNKNLGRLSCHLRWPLRLRSKSKLRFGKPTPKPHTEPSSSTPEAPPPKPIRIATFNAALFSMAPVLPEADKIAASHDNVGRAKSLYERPRSILKQSQSPLLGKSKLRVSINLPDNEISLRQASFTKHERKGSLSWSWSFGEGVKERQRKTVVEVLRDLNADVLGLQDVKAEEENGMKPLSDLAQALGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDKTDFRNVLKATIDVPQEGELHFYCTHLDHLDENWRMKQINAIIQSNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSRHYTDAKDFAGECESVVMIAKGQRTSDHHIVKVDVVKVNSNPQENLTKKQRQPRQKIVRIKSAPSKCIWKTHTGDID 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1363 418 Pfam Endonuclease/Exonuclease/phosphatase family 172 305 IPR005135 GO:0003824
Ssu4g1363 418 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 19 149 - -
Ssu4g1363 418 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 174 365 - -
Ssu4g1363 418 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 366 413 - -
Ssu4g1363 418 MobiDBLite consensus disorder prediction 50 75 - -
Ssu4g1363 418 Gene3D Endonuclease/exonuclease/phosphatase 160 378 IPR036691 -
Ssu4g1363 418 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 19 149 - -
Ssu4g1363 418 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 174 365 - -
Ssu4g1363 418 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 366 413 - -
Ssu4g1363 418 SUPERFAMILY DNase I-like 74 375 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1363 Ssu-Chr4 22488588 22491227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1363 - - gmx:100820515 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1363 4 22488588 22491227 Ssu4g1363 4 22488588 22491227 ECH
Ssu4g1363 4 22488588 22491227 Ssu7g2064 7 40875863 40879321 PCT