Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1360 ATGAATTTCTTCACATCCGTTTTCTCAGACGACCCGGACCCTTCCGGCTCCGACAATGCGCACCGAAACGAATCACAGGACGAGCCGGGTCGCGACTCCGAGCACCGATCCAATCCCTCCGGTGCCGGCGCGTGGGAATTCGGCGGCCTATGGAAAACCCTGAGCTCGAAATCGGAATCCATCGTCGAGATCTACCGTCGCGACCTGCAGGAATTCGGCACCGGTTTGAAGAAGGAGATAGAGGTCGCTCACGGTTCTCTTGAGACGGTGGGGCACGTCATCGACCACTTCGGAAACACCGTCGTCAAGGGAACCGCTCAGATCATATCTCACGGCAAGGACGCCATCCTCGATTCCGGTAATAACAGAAACAACACCGGCACCGAGAAGAGCTTCAATTCGAAGCGCTATAGTAGGTTTGACGCTCAGGTTCGTGCCGTTCAGGGTGACGTTAGTACTTACTCCGAAGTGCCCGAGGATTTGGACGAGTATAACAAGTGGAGATCGGGGTTTTCGTTGGAAGGAAAGAGTGAGGAAATGGAGGGGTTTCTGAGAGAGAATGAGGCTATGGAGGGTGTTTACAAAAGGGTTGTTCCCAATGTTGTTGACCGTGACACGTTTTGGTATAGGTATTATTATAGAGTCTATAAGCTCAAGAAAGCTGAGGACGTGAGGGCGAGGCTCGTGAGGAAAATGTCAAGGGAAGAGGAGGACTTGAGTTGGGATtttgaagaagaagatgatgatgatgggcATGTGAGTGGTGATGAGAATAAGGGGAAAGAGGGAGATTCTGAGTTGCATGGTGCTAGGTTTGATGCTAATGGAGCAAAGAAGTTGAATGTGGAAGAGGTGCATGAGTCTGTCGAAGAATCAAAAGTTGACAAGAATAAAGAGGTTGTTGAGGAGATGCGTAATGGAAGCAAgaaaagtttcaatgaagtGGATGAGACGAAGAATTCTGCTGTAGATTCTGATAAGAAAGTGATGATGGAAAGGAAGGTTGACGATGGAAAAGATTCACTGGTTGCAAGTCAGCACTCGGGGAATGAAAAGGAGGAGAATGAGGACCTGGAGTGGGATGAGATTGAGGATCTTAGTAGAATTGATGAAGAAAAGGCAACTGGGACGGGTAGCCCAACCAAAGTTGATTTGCGGAAGCGCCTGAGTGCTGCacaagaacaagaagaagaaaaagacttGAGTTGGGACATTGAAGATGATGATAAGCCTGCTAAGGCATGA 1245 0.4675 MNFFTSVFSDDPDPSGSDNAHRNESQDEPGRDSEHRSNPSGAGAWEFGGLWKTLSSKSESIVEIYRRDLQEFGTGLKKEIEVAHGSLETVGHVIDHFGNTVVKGTAQIISHGKDAILDSGNNRNNTGTEKSFNSKRYSRFDAQVRAVQGDVSTYSEVPEDLDEYNKWRSGFSLEGKSEEMEGFLRENEAMEGVYKRVVPNVVDRDTFWYRYYYRVYKLKKAEDVRARLVRKMSREEEDLSWDFEEEDDDDGHVSGDENKGKEGDSELHGARFDANGAKKLNVEEVHESVEESKVDKNKEVVEEMRNGSKKSFNEVDETKNSAVDSDKKVMMERKVDDGKDSLVASQHSGNEKEENEDLEWDEIEDLSRIDEEKATGTGSPTKVDLRKRLSAAQEQEEEKDLSWDIEDDDKPAKA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1360 414 SUPERFAMILY BSD domain-like 137 224 IPR035925 -
Ssu4g1360 414 Coils Coil 218 238 - -
Ssu4g1360 414 PANTHER PROTEIN, PUTATIVE-RELATED 1 82 - -
Ssu4g1360 414 MobiDBLite consensus disorder prediction 15 35 - -
Ssu4g1360 414 MobiDBLite consensus disorder prediction 241 414 - -
Ssu4g1360 414 PANTHER SYNAPSE-ASSOCIATED PROTEIN 82 408 - -
Ssu4g1360 414 MobiDBLite consensus disorder prediction 1 43 - -
Ssu4g1360 414 PANTHER PROTEIN, PUTATIVE-RELATED 82 408 - -
Ssu4g1360 414 MobiDBLite consensus disorder prediction 253 354 - -
Ssu4g1360 414 SMART wurzfinal6 167 219 IPR005607 -
Ssu4g1360 414 Pfam BSD domain 167 223 IPR005607 -
Ssu4g1360 414 ProSiteProfiles BSD domain profile. 167 219 IPR005607 -
Ssu4g1360 414 Gene3D BSD domain 128 230 IPR035925 -
Ssu4g1360 414 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1360 Ssu-Chr4 22463710 22464954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1360 - - gmx:102665065 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1360 4 22463710 22464954 Ssu4g1360 4 22463710 22464954 ECH
Ssu4g1360 4 22463710 22464954 Ssu7g2070 7 41004536 41005873 PCT