Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1339 ATGTCCTCAGGTCTCAACGGTCCAACTCCAACGCCAACCACTGCTTCTTTTTCTCCCTCCTCGAACCTACCGTTTTCGAAAACCAAAATGCCTCTTCCATCTCTCTGCAACTTCTTCTTCGTCATCTCCCTCTTCCTTTCCCTCAATCCCACTCTCCAAATCCCCCTCCTGGCCCCCGTTTCAAAAGACGACTCCACCCAACTCTACACCCTCACCCTCTACCTCAAAAGCCCACTCCAACCCACCAAACTCCACCTCCACCTCGGTTCCTCTCTCACCTGGCTCCTCTGCGACTCTACCTCCTACCGCCGGGTCCCCTGCAACTCCTCCCTCTGCGCCTCCTTCCCCTCCGCCACCTGTTCCAACGATGCCTGCACCCTCTTCCCCGAAAACCCCGTTACCCGAAACACCGTTCTCGGCACCGCCCTCATCGACTCCCTCGCGCTCCCCACCTACGACGGGTCCCATCAGAGCCCACTCATTCTCATCTCCGATTTTGTATTCTCTTGCGCCACGGCCCATTTGCTCCAAGGCCTCGCCACCAATGCGGCCGGTCTCGCCGCTTTGGGCCGCTCCAACCACTCCCTCCCGGCCCAAATCAGCACGGCCCTCTCCTCCTCACCTCATTGTTTCGCTCTCTGCTTGCCCGCTTCATCCTCGCGCCCTGGCGCGGCTTTCTTCGCCTCCACCGGcactttccttttctcttccaaAATTGACCTCACTTACACTCCGCTCGTTGTAAACCCCGTTGCGGACACCGTCGTCACCGACAATTTACAACCGTCTGATGAGTATTTTGTAAACCTCACCTCGATCCGGATCAACGGCAAGGCTCTTCCCGTCAACGCGTCGATCTTGACCGTTGATCAGAACGGCTTCGGTGGGACCAAGATCAGCACCGCGGAACCCTACACCGTTCTGGAAAGTTCTATATACAAACTCTTCGTCCAGCTGTTTGTGAACGAGTCGATTGCTTTTAACGTGACGGTGACGGAAGCCGTCGAGCCCTTCGGCGTGTGCTACCCTGCGAGCGAGCTCACGGAGACGCGGGTGGGACCCGCGGTGCCGACCGTTGATCTCGTGATGCACAGCGAGGACGTGTTCTGGAGAATATTCGGGGGGAATTCGATGGTGAGGATTGAAAAGGGAGGAGGGGATGTGTGGTGTTTGGGTTTTGTGGATGGTGGGACCCGTAGGAGGACGCCCGTTGTGATCGGAGGGCATCAGTTGGAGGATAATCTCGTGCAGTTTGATCTTGAGGACAATAGATTCGGTTTCACCTCGTCTCTGTTGCTTCAGGGTGCCACGTGTGCTAATCTCAATATCACTAATTTTGCCAATCACTTAAAGTAG 1356 0.5553 MSSGLNGPTPTPTTASFSPSSNLPFSKTKMPLPSLCNFFFVISLFLSLNPTLQIPLLAPVSKDDSTQLYTLTLYLKSPLQPTKLHLHLGSSLTWLLCDSTSYRRVPCNSSLCASFPSATCSNDACTLFPENPVTRNTVLGTALIDSLALPTYDGSHQSPLILISDFVFSCATAHLLQGLATNAAGLAALGRSNHSLPAQISTALSSSPHCFALCLPASSSRPGAAFFASTGTFLFSSKIDLTYTPLVVNPVADTVVTDNLQPSDEYFVNLTSIRINGKALPVNASILTVDQNGFGGTKISTAEPYTVLESSIYKLFVQLFVNESIAFNVTVTEAVEPFGVCYPASELTETRVGPAVPTVDLVMHSEDVFWRIFGGNSMVRIEKGGGDVWCLGFVDGGTRRRTPVVIGGHQLEDNLVQFDLEDNRFGFTSSLLLQGATCANLNITNFANHLK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1339 451 Pfam Xylanase inhibitor N-terminal 69 227 IPR032861 -
Ssu4g1339 451 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1339 451 SUPERFAMILY Acid proteases 61 432 IPR021109 -
Ssu4g1339 451 Pfam Xylanase inhibitor C-terminal 265 428 IPR032799 -
Ssu4g1339 451 CDD xylanase_inhibitor_I_like 74 431 IPR033868 -
Ssu4g1339 451 PANTHER OS05G0403000 PROTEIN 38 442 - -
Ssu4g1339 451 ProSiteProfiles Peptidase family A1 domain profile. 69 428 IPR033121 -
Ssu4g1339 451 Gene3D Acid Proteases 232 445 IPR021109 -
Ssu4g1339 451 PANTHER ASPARTYL PROTEASE-RELATED 38 442 IPR001461 GO:0004190|GO:0006508
Ssu4g1339 451 Gene3D Acid Proteases 49 228 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1339 Ssu-Chr4 22122707 22124062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1339 69 430 Miscellaneous Gene Families AT1G44130 21.503 1.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1339 - - gmx:100800584 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1339 4 22122707 22124062 Ssu7g2093 7 41315181 41316485 PCT