Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1330 ATGGAATCAACTCATGTAATAGTCATTACAAATGTCGAAGAGAATATTGCTCATGCAAAGGAGaataaaacattcaaatttCGACTTCCACCCATTTTTTCCCAGCTTGGGGAAAATGAAGTCCACTGGTCTCTTGTCTCCATTACTTCCAATCTCAGAGACAAGCAGATGCAAAGTGAACATGACGCCAGGAAGATGATCCACTGTATCAAAGTGGGAATATCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTGTTTGAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTCGTCATGTTTGAATTCTCTGCAGGAGCCACGCTAGGAAAGGGCTTCAATCGTGGACTGGGAACTATTATAGGAGGAGGACTAGGTTGCTTCGCAGCATTTTTTGCCCAAAGCATTGGGATTGGAAGGGTTGGCAACTCGATTATAATCGGTGCTTCAGTATTTATAATTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATCAAGAAAAGATACGATTATGGAGTGACGATATTCCTGCTCACTTTCAATCTAGTGCTGGTTTCTGGCGTACGTGCTCATACGAAAGTGTGGGAAATAGCCCGTCAACGTATCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGAATTTGTTCGTCTTTCCTTTGTGGGCCAGCGATGAACTTCATGATTCCATAGTCTCAAGATTCCTGGACCTTGCCAATACAATTCAAGGTTGTATAGGGGAATGTCCCAAAATCGTTAGTGAAAAGGAAAACCAACCCCATGCTAGCTTCAACGATTGCAAGACGGTGTTGAACTCCAAGTCAAAGGATGAATCATTGGCAAATTTCGCAAAATGGGAACCCTGGCATCGTAAATTTGGATTTTCTTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAATTGGCTGCATTTATTCTTGCAGTGGGACGTTGCCTTGAAGCATCACAAGAGCCCATGGCTTCTTTGAGAGAGTCACAATCGGTCCAATTAGAAAGATACGAAGCAGTTGAATCAAGGATCGTGTGTATTCTGAGAGAACTTGGAGAAAGCATGAAGCAAATGAGGAAATGTGATGCAAACGCCAGCATTTCGGCCAAGTTGAAAGCCGCGAGAGGAGATTTAAGCTTGATAATTTCCACATCCAAAATGGTAGAACTTGAGGGTGCCCAAGTGCTAACAATTGCTAGCTTCGTGTTCTTGCTCATGGAAGTGGTAGGGAAGGTAGAGGAATTGGTGAAAGAGGTGGAGGAGCTCGGTGATACCGCTGGTTTTCGCACCCCCACAACTCCAATGTCTTCGTAG 1362 0.4339 MESTHVIVITNVEENIAHAKENKTFKFRLPPIFSQLGENEVHWSLVSITSNLRDKQMQSEHDARKMIHCIKVGISLVLVSLLYLLNPLFEQVGENAMWAIMTVVVMFEFSAGATLGKGFNRGLGTIIGGGLGCFAAFFAQSIGIGRVGNSIIIGASVFIIGSVATYLRLVPSIKKRYDYGVTIFLLTFNLVLVSGVRAHTKVWEIARQRILNILMGFIVCVCVNLFVFPLWASDELHDSIVSRFLDLANTIQGCIGECPKIVSEKENQPHASFNDCKTVLNSKSKDESLANFAKWEPWHRKFGFSYPWGRYLKIGEVLRELAAFILAVGRCLEASQEPMASLRESQSVQLERYEAVESRIVCILRELGESMKQMRKCDANASISAKLKAARGDLSLIISTSKMVELEGAQVLTIASFVFLLMEVVGKVEELVKEVEELGDTAGFRTPTTPMSS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1330 453 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 4 445 - -
Ssu4g1330 453 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 445 - -
Ssu4g1330 453 Pfam Aluminium activated malate transporter 60 439 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1330 Ssu-Chr4 22019988 22022584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1330 52 400 Miscellaneous Gene Families AT5G46600 42.659 1.98e-87 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1330 - - gmx:100779890 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1330 4 22019988 22022584 Ssu4g1330 4 22019988 22022584 ECH
Ssu4g1330 4 22019988 22022584 Ssu7g2097 7 41375326 41379945 PCT