Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1317 ATGGAGCTTGGCAAAGTGACGCTAGAGATCTTCTCCAAACTGGAGCAGCAATGGCTCTCACACTACGAAGCCACAGCCAAAACCCGCGTTCTCAGCATTGACGGCGGAggaaccaccgccattgtcgcCGGCGCCGCCCTCGTCCACCTCGAGGACCAGATCCGCGCCCAAACCTCCGATCCCCACGCGCAAATCGCCGATTACTTCGACATCATCGCCGGCACCGGCATTGGCGCCCTCCTAGCCGCCATGCTCACCGCCGACGACGGCTTCGGCCGGCCTCTCTACACCGCCCGAGACGCCGTCCGCTTCATCGCCGAAAACAACCGCGAACTCTACAAGCCGAAGCGCGCCGGAGTGCTTCGCCGGCGCCGGAGATTCTCCGCGTGGAGCATGGAAAAGGCGCTGAAGCAAGCGTTCCAGAGAAAAGAGGAGGAAGGACGGTTGTTGACTCTGAAGGACACGTGTAAGCCGCTCCTTATCCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTCGTGTTCTCCCGAGCCGACGCGTCCGAGTCGCCGAGTTTCAACTTCGAGCTTTGGAAGGCGTGCCGCGCCACGTCAGCAACGCCCGGCCTCTTCGAGCCCTTCCACTTCGCCTCCGTCGACGGAAAGACCTCGTGCTCCGCCGTCGACGGCGGTCTGGTCATGAACAACCCGGCGGCGGCGGCCGTCACGCACGTCCTCCACAACAAGCGCGACTTCCCGTCGGTGAACGGCGTCGAGGATCTCCTCGTCCTCTCCATCGGAAACGGAGCGCCGGCGAAGAGAGTGAACAACGTCCGCGAGTGCTCCACGTCGGCGGTGGTTGACATTGCGCTCGACGGCGTTTCCGAGACCGTTGACCAGATGCTAGGAAACGCCTTCTGTTGGAACCGTACGGACTATGTCAGGATTCAGGCGTTCGGTTTGGGAGAAGGAACGAAGACGGAGGAAAAGAAGGTGCTGAACGAGAGAGTCCTGGAATCGTTACCGTTTGGCGGCAAGCGGTTACTGCAAGAAACTAACGGTAACAGAATTGAGAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAGACTAGTTTGCCACCTAGTCCCTGCAAGGTTCCGTCGTGA 1122 0.5909 MELGKVTLEIFSKLEQQWLSHYEATAKTRVLSIDGGGTTAIVAGAALVHLEDQIRAQTSDPHAQIADYFDIIAGTGIGALLAAMLTADDGFGRPLYTARDAVRFIAENNRELYKPKRAGVLRRRRRFSAWSMEKALKQAFQRKEEEGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKACRATSATPGLFEPFHFASVDGKTSCSAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRVNNVRECSTSAVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGTKTEEKKVLNERVLESLPFGGKRLLQETNGNRIESFVQRLVATGKTSLPPSPCKVPS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1317 373 PANTHER PATATIN 2 372 - -
Ssu4g1317 373 CDD Pat17_PNPLA8_PNPLA9_like 30 310 - -
Ssu4g1317 373 PANTHER PATATIN-LIKE PROTEIN 6 2 372 - -
Ssu4g1317 373 SUPERFAMILY FabD/lysophospholipase-like 27 315 IPR016035 -
Ssu4g1317 373 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Ssu4g1317 373 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Ssu4g1317 373 Gene3D Cytosolic phospholipase A2 catalytic domain 18 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1317 Ssu-Chr4 21672541 21673889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1317 1 370 Acyl Lipid Metabolism Gene Families AT3G63200 69.415 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1317 - - gmx:100806989 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1317 4 21672541 21673889 Ssu7g2111 7 41701495 41702796 PCT