Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1315 ATGGACCGAACCAGAGAATCAAGAAGATCGTCCTCATCCATGCCTGCAAATCCCTTCCCTCGACGCCGTCACCCTACTATCTCCCTCCGAGGCTCTTCTCAGGAAGAGGCGCGAGAGACGGTGACGTTGaaggctaataataataataagagggACAGAGAATGGTCGAAGAGGAGGAGAGGGTGTAACTCTCACAGCACCGAAGAAGAGAGTGTGGGAAATGAACAAGACGCGCGGATGCATTCTTCCAATACTGCGTCGTCCGCATCCGATCACAACCAACGGGGACGGAACCGGAACGTAACCGACGAAGTCATCGGCGCCACAGTCCCCCGGAGGACTCGTTCAGCTTCTGTGAAAAGACCGCATCACAGTTGGGTTGAGGAGCAGAGTGCTGAAGCTGCGTCGCCTTCCTCTTCCAATGTTTCCCTTCCCAAGAAGATGAAATCGACTGGGCCGAAGACTCGGGTTCCGTCTTCGTCGAATCAGGAAGACATCGAGATTGAGATAGCCGAGCTTCTTTACGGTTTAAGAACTTCCCAGAATCACGATTCTTCTTCTTCGCAAAAGGTCGAAGCAAGCGATTCGCGTCCACCGCGGAGCGCTACTCCTTCCATTGATGCGGAGAAGAAGAAAGTGGAAGATTACAGTTCTTCTTTCACTCTACCTCCGAACAATTCAACTGCCGAGTCAGTCAGAATCAAAAGCGAGCAACATGTGAAAACGGAGAAACCTTCACCCGAATCGCCTAGGATGTCGGGTGGTCATGGAATTGGGTCGTCCCAGGGTCCAAAACAAGACATCGAGGAAGATAATTTGAATTCAGGTGCTGGATGTGGGGAAACTGCATATGGAAGATCAGAATCCAAGTTGGATGTTGATAAACACAATTGTGCTTCTACCAGAGGGATGAATGATGATGTTCCGGGGGACAACGGCCAACACGAGTTTGAGATTGATCTGATGGCTCCTCCTCCTGTGACCTTATCCCCAGAAAGGGATAACTTATCAAGGGGTGAAGACGGCGTCAAGGTTGAAGACAAGGTAGAGAGTTTTGTAAAGAAGGAGAAAACACTGGGAGAAATTGAAGAGGTGGAGAAGAAATTTGATTTGGAGAAGCCGAATAAACATAATGACCTAGTGACGAGCCAGGAATTGGGGGAGCAGGATAGGAATAAGGAACAACCAACTACCACATCAACAAATCCCAAACTGGAGAAAACTGTTCAATGTAGTTCAATGTCTTTGTCAACGGCTGTATCTGAAAGGCCAAGCAGTCTCTTTTCTCTTGGATGCATGCCGCCCTTGGGGACAATTGTGAAGACAGATAAAACCACAGTACTGTTGACAGCCCCACAGCATGGAAACTTTGTTCTGTCTCAACCTCGGCCAAAGAGATGTGCAACCCATGATTACATTGCTCGTAACATCTTCATGCACCAGCAGTGCACAAAGATGAATACCCTTTTGCCATCAGCAATTGGCTGTGGTTCTATGTGTGACACAAAGCCCAACAATGTCAATCGAATGCACTCTGCTGAAAGTGTGGTTGTTGGGAAGCAGTCTCATAAACAGTCACCAGGCTTGAACCAAAATGCTGCAGCAGAAAAGGGATGGGCTGCTGCAATTAAAAGTTCTGGTCCTGCCAACCCAATGGATTTAACACAAATGAAGCAGCTTGTGCTTCAGCAAGGTCCACATTCAGGGTCTTCTGGAAATATAGTGCATGGTCCTGCTTTCCTAATTCCTCCGGGCCATCATCAGGCATCTGTAATAACGGGTACTGGTCAGGCTGGTGGTGTGAACAACGCTAGCAGTGCTTCCTCGTCTAATAAATTCCACAGTTCAGCAGCTGGATCTCTTGGTACTTCAACACTGCCACTGCCAGCAGTTGCTGCTGCGATGAGCTTTAGCTACCCAAATTTGGCAGCCAATGAAGCTCCATATATGACAATAGTTCCGAATAGTGGGTATCCATTCCACTTTTCAACTCCCCTTGGAGCATCTGCAGCTATCAGAGGTGCAAGCCCTGCGCAATCAACACCTATGCTCAATGGGCCTTTGTACTCTTCTCAGATCTTCCACCCGCTTCAGTATCCACAACAGCATCCTCACTCCCAACCACTGGTTCAACCTAGTTATCTTAATGCAAGCACTTCTAGTGTTTCATCATCATCTCATAAGCAGTCACAGGGAATGCAAGGTAACAGCAACAATATTTTGTCCTCCACAACTATGCAACTACAGCAGTCACAAAAGCAGCACACCTCACAATCTCATCCTCGCAAGCACGAGACTGGGATGGCTGGGGAGAATGCTCCATCTGCTGCTAGTGGTACAGCTTACTCCCAAAAGAATGTATTTGGGCAAAACTTCACGATTCCAATTCAGCCACTGAGCCTTTCTTTCACGCCACCTGCAACATCAGATAGTGTTGGTGGCAACAGTGGAAATTTTGGTGACAAGCAGCAACTGCAACAGGCTTTGAAGGGGGGAATTGAGCATATTCCATCTCAAGCATATGCAATTTCCTTTGCTGCTTATAATGGGACCAGTGTTCCTTCAAATCTTAACTTCTCAACCATGGCACAAAACCCAGTGATATTTCAGAGCCTGCCTGATATTGCATATCATGCTACAAGTACATCTCATGCGACTCAGCAAAAGATGTATCCCATTACGGAAGGGAAGACTGGAGGTAATTCTTCTCACCGAGATGATGAAAAGAAAACCACTTCTGGGAAGCCATCAACCAACAGGCCAACAACTCTTGTTTTTGATAATTCTTCAAAGAATCTTAACTTTGTTTCATCTCCCATGAATGGAAACTGGCCTAGTCGTTCCATTACTTCAACTGCAACAACGACAAGTTTGCCTCTGTCTAGTAATGCTGCAAATTCTCAACAGCCACCACAGCTGCTTCATCTTCAGCAGCAGCATGGTATGTTACAGCAGCAACCTGCTGTGGCTACTCGATATAAAGCCTCATCAACTAATGCTACTACTGctgcaaaaattttaaacactccCCCGGTTTATTCACAAACTCAAACTCAGTGCAAAAGTTCTAATCAAGGTTCCCAGTCAAAAAACTTGGTAAAAACCCCAGATTCTCAGGTTCATAACACATCTATCATGGCATCTACTACTGCAACCCTCCAAAGTTTTTTGCAAGATCAAGGAAGAGTTATACAGGGTCATAAGCAAATATCTTTTGGGGGAAATTACATATCGTCCCTGCCACTCCAAGGGCAACAGCTATTCAACAACAACCAGTCTCTTAGTACAACAGTTGCAGGGACTCCACCTAGTGGAGGCAACTTGAAGACGAATTCCCAGGGAAGCAGAGTTAGTTCATCAGTGAACACTTTGCAGATGCAACAAACTGAGAATTCTTCCACTGGAACTGGTCAAAAATCTTCCCCAGTTTGTGGGAGAAATGTCCCATCGATCTTGAGCTCATGCCCCAGTCACCTATCTGAGCTGaagtattag 3495 0.4601 MDRTRESRRSSSSMPANPFPRRRHPTISLRGSSQEEARETVTLKANNNNKRDREWSKRRRGCNSHSTEEESVGNEQDARMHSSNTASSASDHNQRGRNRNVTDEVIGATVPRRTRSASVKRPHHSWVEEQSAEAASPSSSNVSLPKKMKSTGPKTRVPSSSNQEDIEIEIAELLYGLRTSQNHDSSSSQKVEASDSRPPRSATPSIDAEKKKVEDYSSSFTLPPNNSTAESVRIKSEQHVKTEKPSPESPRMSGGHGIGSSQGPKQDIEEDNLNSGAGCGETAYGRSESKLDVDKHNCASTRGMNDDVPGDNGQHEFEIDLMAPPPVTLSPERDNLSRGEDGVKVEDKVESFVKKEKTLGEIEEVEKKFDLEKPNKHNDLVTSQELGEQDRNKEQPTTTSTNPKLEKTVQCSSMSLSTAVSERPSSLFSLGCMPPLGTIVKTDKTTVLLTAPQHGNFVLSQPRPKRCATHDYIARNIFMHQQCTKMNTLLPSAIGCGSMCDTKPNNVNRMHSAESVVVGKQSHKQSPGLNQNAAAEKGWAAAIKSSGPANPMDLTQMKQLVLQQGPHSGSSGNIVHGPAFLIPPGHHQASVITGTGQAGGVNNASSASSSNKFHSSAAGSLGTSTLPLPAVAAAMSFSYPNLAANEAPYMTIVPNSGYPFHFSTPLGASAAIRGASPAQSTPMLNGPLYSSQIFHPLQYPQQHPHSQPLVQPSYLNASTSSVSSSSHKQSQGMQGNSNNILSSTTMQLQQSQKQHTSQSHPRKHETGMAGENAPSAASGTAYSQKNVFGQNFTIPIQPLSLSFTPPATSDSVGGNSGNFGDKQQLQQALKGGIEHIPSQAYAISFAAYNGTSVPSNLNFSTMAQNPVIFQSLPDIAYHATSTSHATQQKMYPITEGKTGGNSSHRDDEKKTTSGKPSTNRPTTLVFDNSSKNLNFVSSPMNGNWPSRSITSTATTTSLPLSSNAANSQQPPQLLHLQQQHGMLQQQPAVATRYKASSTNATTAAKILNTPPVYSQTQTQCKSSNQGSQSKNLVKTPDSQVHNTSIMASTTATLQSFLQDQGRVIQGHKQISFGGNYISSLPLQGQQLFNNNQSLSTTVAGTPPSGGNLKTNSQGSRVSSSVNTLQMQQTENSSTGTGQKSSPVCGRNVPSILSSCPSHLSELKY 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1315 1164 PANTHER PROTEIN TIME FOR COFFEE 1 1164 IPR039317 GO:0042752
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 915 969 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 1 165 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 177 317 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 287 301 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 900 914 - -
Ssu4g1315 1164 PANTHER TIC-LIKE PROTEIN 1 1164 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 1094 1147 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 883 899 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 255 269 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 178 201 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 1015 1039 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 717 756 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 77 95 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 370 407 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 131 165 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 393 407 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 370 392 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 218 233 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 717 779 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 45 76 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 883 969 - -
Ssu4g1315 1164 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1315 Ssu-Chr4 21608471 21613051 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1315 - - vra:106757719 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1315 4 21608471 21613051 Ssu7g2113 7 41737851 41742814 PCT