Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1293 ATGGCGACTCTGTCCCATGCTGATTCTAAACGAATGTATTCATGGTGGTGGGACAGTCACATTAGCCCCAAGAACTCGAAATGGCTCCAAGAGAATCTGACAGATATGGATTCCAAGGTGAAGCAAATGATCAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGGAGGGCAGAAATGTATTATAAGAAACGCCCAGAGCTTATGAAATTAGTGGAAGAGTTTTACCGTGCATACCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATACGTCAGGCCCATCGTACCATGGCTGAAGCATTTCCTAATCAAGTCCCTCTGGCACCAGCAGATGATTTACCTGTTGTTTCTTCCATGGAGACTGAGCCACATACACCAGAGACATTCCGCTTTTCCCATGCATTTCTTGACTCAGATGAATTGCAAAAGGATGCTTCAACCCATTTCCATGCCATCAAACGAAATGGATCTTTTACTGATGAAGTTGATTCTGCTATAAGCAGAAAGGGTTTGAAGCAGCTAAACGATCTATTCATGTCAGGAGAATCTGTAAGTCATGCAAAGTCTGCAGAAGGGCGTGTTAGAAGGGGGCTCAACTTTCTTGACATACAGGAGATTAATGGGCAAAACAATGGAAGCCAAGATACTAGGGCTCAAGTCGTATCCGAGTCTGAACGGATGACCAAAGCCGAGACAGAAATTTTGGCCTTAAAGAAAGCCCTTGCCAACTTGGAAAGTGAAAAGGAGGCTGGCTTGCTTCAGTATCAGCAGAGTTTGGAGAGATTGTCTAATCTGGAATCAGAAATGTCTCGTGCAAGAGAGAATTCTCAAGGACTTAATGAACGAGCAAACAAAGCTGAAGCCGAAGTTCAAACCTTGAAGGAAGCTCTTGCTGAATTACAGGCTGAGAGAGAAGCTAGTCTTCTTCAGTACCAGCAATGCTTggagaaaatatataatctGGAGAAAAATACTTCTTCTGCTCAAAAGGATGTAGGAGAACTTAATGAGCGAGCTACTAGAGCTGAAACTGAAGCTGTTTCCTTAAAGCAAGACCTTGCTAGAGTAGAAGCTCAAAAGGAATCTGCCCTTGTTCAATATAACCAGTCCTTGGAGATGTTGTCAAAACTAGAGGAGAGGTTAGTACAAGCTGAAAAGAATGCAAGGAGAATTAATGAGCAAGCTAATGcagcaaaaaatgaaattgagggCCTGAAGTTAGAAATTGCTAGACTTACTGAAGAGAAGGAGGATGCAGCTCTTCGTTATCAACAATGCTTGGAGATAATTTCCAGTTTGGAGCATAAACTCTCTTGTGCCCAAGAGGAGGTGCAAAAGCTAAATTGCAAGATAAATGATGGGGTTGAAAAGTTACATAGTTCTGAACAGAAGTGTATTCTCTTGGAAACATCAAATCAGACTTTGCAATCTGAATTGCAGTCTTTGGCACAGAAGTTGGGGTCTCAAAGTGAAGAACTTAGCGAGAAGCAGAAGGAATTGGGTAGACTTTGGACTTGCATACAAGAGGAGAGATTGCGATTCATCGAGGCTGAAACTGCTTTCCAAACTCTTCAGAATTTGCATTCTCAATCTCAGGAAGAGCTAAGATCTCTTGCTACCAAGTTTCAAAGCAAGGTTGAAATTCTGGAGAATATGGAATCCCATAAGCAGGCTTTAAAGGATGAAGTACACAAGGCCAAAGAGGAAAACAAAACTCTAATTAAGCTCAAATTATCTTCATCTTTGTCTATAAAAAATTTGCAGGATGAGATATTAAATCTGAGGGAGATAATAAAGAGACTTGAACTGGAGGTTGGACTTAAAGTAGATGAAAGAAATGCTCTCCAGCAAGAAATTTACTGTCTTAAAGAGGAGCTTAATGATGTGAATAAAAGACATGAATCCATGATGGAGGATGTCAGATCAACTGACTTAGATCCACAGTGTTTTGCATCATCTGTGAAGAAATTGAAAGATGAGAACTCAAAGCTGAAGGAAAGATGTGAAACCTACAAAGATGATAAAGCAGCTCTAAAGGAAAAACTGGAGATCATGGAGAAGCTTTTGGAGAAGAATGCTGTTTTGGAGAGATCCCTTTCAGATTTGAATGTTGAGCTAGAGAGTGTTCGAGGAAAGGTAAAGGTATTGGAAGAAACTTGTGAACCTTTGCTTGGGGAGAAATCCACTCTTGCTGCTGAGAAGGCCACCTTGTTTTCTCAGTTACAAACCACAGCTGAAAAGCTGGAGCAGCTTTCAGATAAAAACAATCTTTTAGAAAGTTCACTATTTGATGTGAATGCTGAGCTTGAAGGATTAAGGATAAAGTCAAAGATTTTAGAAGACTCTTGTTTGTTGCTTGACCATGAGAAGTCCAGTCTCACCTCTGAGAAAGAAACCTTAGTTTCACAATTGAACATCACTCATCAAACTCTGAAAGATCTTGGGAAACAACACAGTGAATTGGAACTGAAGCATTTGGAACTGAAAGCAGAAAGGGAGTCTGCACTTCAAAAGTTGGAAGAGCTACTTGTTTCCTTATATGCTGAGAGGGAAGAACATTCCAGAATTGTGCAATTAAATGAATGTCACTTGGCTGAGAAGgaattacatatttttgttcTCCAAGAAGATGCAAATTACCAGAAAAAGGAATACGAAGAGGAGCTGGACAGAGCTGTACATGCTCAAATGGAAATTTTCATCTTGCAGAAATGTATCCGGGATTTGGAGCAGAAGAACTTTTCCCTTCTAGTTGAGTGTCAGAGACTCTTGGAGGCTTCCAAACTGTCTGATAGATTGATATCTAAATTGGAGAATGACAATGTTCAAAAGCAAGTTGATGTGAATTCATTGtctgcaaaaattaaagtactAAGGATTGGGCTGCTTCAGGTGTTGAAGACTCTTGACGTTGACAGTGAGCCTTGGTGTGAAGATATGATTGAAGAAGACCAGGAGCTTCTGAACCATATACATGGCAAACTTCAGGAGACACAGAATTCTTTTGTCACAATTTTCAATGAAAGCCAGCAAGTGGCCATTGAGAATTCAGTTCTTGTTACATTCCTTGGCCAGTTGAAATTTAAGGCTGAAAATCTTTTGACAGAAAGAGATTCCCTTGATAGGGAGTTGAGAACCCAGTCTAAGCATTTCTTGGCATTGCAAGCAGAGGTACAAAAGATATTGGAGAAGAATCAGGAATTGAAGCTGACAATAGgcaaaggagaagagaaaatggAAGCAATGACAACTGTAATTGAGAATCTATGCAAACAGCTGTTAGACTTGAAAGAGGATCACAAAAACATAAAGGAAGAAAGTTGCAAAatctttgaagagaaaaattccTTGATGAGAAGATTTCTGGACCTGGGTGAAGAGAAAAGTAAGTTGGAAGAAGAAATCTGCATCATGATTCATGAGACAATAGCACAATCTAATATTTCTCTGATCTATCAGAACATTGTCTTTGAAAAACTCCTGGCACTTAAAGAACTAAGCAAAGATCTTGATAGACTTTGTTCAGTAAATACTGACCTTgaggagaaattaaaaataatgagggGCAAATTAGAAGATGTACAAATGGAAAATTCAGATCTTAAAGAGTCCTTTGTAGTGTCAAGCATTGAACTAAAATTAGTTCAATCCGTGaatgatcaattaaattgtCAGATTAGGAATGGAAAGGAATTGTTGTCTCAAAAGGAAAATGAGATTTTGGAAGCAGCAGAGATGTTTAGCACTTTACATGATGAGAAAACAGAATTGCAAAGATTGGTGGAAGATCTGAAGAGCAAGTATGATGAAGCCAGGGTGATACTTGAAGACCAAGctagtcaaattttaaaattgtcctCCAACAAGGATCGTCAAAATGATGAGCTTGGATGCCTTTGTGAAGTGAATCAGAAGTTGGAGGCTGAAATGAGGCACCTGCATCAAGAACTTGGAGAAATTAAACTGAGGGAAGAGAAGCTAAATTATGAACTACTTAAGGGAACAAATGAGATTGAACAATGGGAAACTCAGGCTGCCACACTCTATACCAGACTGCAGATTTCGGCTGTCAATGAGACATTATTTGAAGAGAAGGTCCGTGAGCTAGCTGATGCATGTGAAGATCTTGAACGCAGAAGCAACTTTAAAGGTATGGAAAGTGAAATGCTGAAAGAAAGAGTTAACAAGTTAGAAGGTGAAAATGGGAGACTACGTGGTCAGTTGGCTGCATATGTCCCAGCTGTTAGTGCTTTGAATGATTGTATAACATCCTTGGAGATGCAGACACTAGCACCTGCAAAACCTCATGACTACAAAGTATCAGAGGTTAAAGATTTTGCAAATTACAAATACAATGAAGGTGGTCCACAAACAGGTGAAGATCAGAATGCTTCAACAACAGATGCACTTCCAGACTTCCAAGACATGCAGAAAAGGATCAATGCAATTGAAATGGCTGTTAAACAGATGAATGAAAGTTTCAAAACCAAGGATGAAATGAGAGAGATTCAAGTGTTGAAATCTGGAATCAGCCGGCGCCAAGGAAATATTCAAGCAAGCAAGTATGTTATCGAAATGGATGAAGCAAAGGAGCATCGAGGTGGACCTGCTGATGAACAGAAAGCAAAAAAATCAGTGTCAGATGTCCCTGTAGCAGAAATTGAAGTTCTGCCGAAAGACATCATGCTTGACCAAACGTCTGAATGTTCATATGGGATAAGTAGGAGAGGAACTCTTGAGACTGATGATCAGATGCTTGAATTGTGGGAAACTGCTAATAAGGATGGTGTTATTGGCCTGACAGTTGGCAAGGCACAGAAGACAGCCATTGCACCAACTGGATACCATCAAAAGAGAGCAACCAAGGAGCCCAAAAACAAATATCCTTCAGTGGAGTCCTTGATTGAGAAGGAGTTGAGTGTGGACAAATTAGAGATCTCAAGAAGATTGACACAGCCACGTCCACATGAAGAAGGCAACAAGAGGAAGATTTTAGAAAGACTTGATTCTGATGCTCAAAAGTTGACAAACCTTGAAATTACCGTGCAAGATTTGATGAGCAAGATAGAAATTACTGAGAGCACAAAGTTAAAAGGTATTGAGTATGATAACGTGAAAGGACAGCTTGAAGCTACTCAGGAAGCCATCACAAAGTTGTTTGATGCCAACCACAAGTTGAAGAAGAATGTAGAAGATGGTACCTGGTCCTTTGCTGGGAAGTCTACAGCAGAATCAGATGAGAGTGGAAGTGTCAGCAGAAGGAGAGTTTCAGAACAGGCTCGGAGAGGGTCTGAAAAAATTGGACGGCTGCAGTTGGAGGTGCAAAGACTGCAATTTTTACTACTAAAGTTGAATGATGAAAAAGAAGGCAAAGGAAAAGCCACGATTGATGAACGAAATTCAAAAGTCCTTCTGAGAGATTATCTCTATGGTGGGACAAGAAGAAACTAccagaagaggaagaagaaagcacCCTTTTGTGCATGCATGCATCCTCCTACTAAGGGAGATTAA 5523 0.3889 MATLSHADSKRMYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHRTMAEAFPNQVPLAPADDLPVVSSMETEPHTPETFRFSHAFLDSDELQKDASTHFHAIKRNGSFTDEVDSAISRKGLKQLNDLFMSGESVSHAKSAEGRVRRGLNFLDIQEINGQNNGSQDTRAQVVSESERMTKAETEILALKKALANLESEKEAGLLQYQQSLERLSNLESEMSRARENSQGLNERANKAEAEVQTLKEALAELQAEREASLLQYQQCLEKIYNLEKNTSSAQKDVGELNERATRAETEAVSLKQDLARVEAQKESALVQYNQSLEMLSKLEERLVQAEKNARRINEQANAAKNEIEGLKLEIARLTEEKEDAALRYQQCLEIISSLEHKLSCAQEEVQKLNCKINDGVEKLHSSEQKCILLETSNQTLQSELQSLAQKLGSQSEELSEKQKELGRLWTCIQEERLRFIEAETAFQTLQNLHSQSQEELRSLATKFQSKVEILENMESHKQALKDEVHKAKEENKTLIKLKLSSSLSIKNLQDEILNLREIIKRLELEVGLKVDERNALQQEIYCLKEELNDVNKRHESMMEDVRSTDLDPQCFASSVKKLKDENSKLKERCETYKDDKAALKEKLEIMEKLLEKNAVLERSLSDLNVELESVRGKVKVLEETCEPLLGEKSTLAAEKATLFSQLQTTAEKLEQLSDKNNLLESSLFDVNAELEGLRIKSKILEDSCLLLDHEKSSLTSEKETLVSQLNITHQTLKDLGKQHSELELKHLELKAERESALQKLEELLVSLYAEREEHSRIVQLNECHLAEKELHIFVLQEDANYQKKEYEEELDRAVHAQMEIFILQKCIRDLEQKNFSLLVECQRLLEASKLSDRLISKLENDNVQKQVDVNSLSAKIKVLRIGLLQVLKTLDVDSEPWCEDMIEEDQELLNHIHGKLQETQNSFVTIFNESQQVAIENSVLVTFLGQLKFKAENLLTERDSLDRELRTQSKHFLALQAEVQKILEKNQELKLTIGKGEEKMEAMTTVIENLCKQLLDLKEDHKNIKEESCKIFEEKNSLMRRFLDLGEEKSKLEEEICIMIHETIAQSNISLIYQNIVFEKLLALKELSKDLDRLCSVNTDLEEKLKIMRGKLEDVQMENSDLKESFVVSSIELKLVQSVNDQLNCQIRNGKELLSQKENEILEAAEMFSTLHDEKTELQRLVEDLKSKYDEARVILEDQASQILKLSSNKDRQNDELGCLCEVNQKLEAEMRHLHQELGEIKLREEKLNYELLKGTNEIEQWETQAATLYTRLQISAVNETLFEEKVRELADACEDLERRSNFKGMESEMLKERVNKLEGENGRLRGQLAAYVPAVSALNDCITSLEMQTLAPAKPHDYKVSEVKDFANYKYNEGGPQTGEDQNASTTDALPDFQDMQKRINAIEMAVKQMNESFKTKDEMREIQVLKSGISRRQGNIQASKYVIEMDEAKEHRGGPADEQKAKKSVSDVPVAEIEVLPKDIMLDQTSECSYGISRRGTLETDDQMLELWETANKDGVIGLTVGKAQKTAIAPTGYHQKRATKEPKNKYPSVESLIEKELSVDKLEISRRLTQPRPHEEGNKRKILERLDSDAQKLTNLEITVQDLMSKIEITESTKLKGIEYDNVKGQLEATQEAITKLFDANHKLKKNVEDGTWSFAGKSTAESDESGSVSRRRVSEQARRGSEKIGRLQLEVQRLQFLLLKLNDEKEGKGKATIDERNSKVLLRDYLYGGTRRNYQKRKKKAPFCACMHPPTKGD 1840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1293 1840 Coils Coil 1082 1109 - -
Ssu4g1293 1840 Coils Coil 475 502 - -
Ssu4g1293 1840 Coils Coil 878 898 - -
Ssu4g1293 1840 Coils Coil 744 771 - -
Ssu4g1293 1840 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1 1840 - -
Ssu4g1293 1840 Coils Coil 552 579 - -
Ssu4g1293 1840 Coils Coil 335 425 - -
Ssu4g1293 1840 Coils Coil 657 722 - -
Ssu4g1293 1840 MobiDBLite consensus disorder prediction 1742 1768 - -
Ssu4g1293 1840 Coils Coil 1770 1790 - -
Ssu4g1293 1840 Coils Coil 1054 1074 - -
Ssu4g1293 1840 Coils Coil 433 453 - -
Ssu4g1293 1840 Coils Coil 1117 1137 - -
Ssu4g1293 1840 MobiDBLite consensus disorder prediction 1750 1768 - -
Ssu4g1293 1840 Coils Coil 1222 1242 - -
Ssu4g1293 1840 Coils Coil 1390 1410 - -
Ssu4g1293 1840 Gene3D - 228 393 - -
Ssu4g1293 1840 Coils Coil 1678 1698 - -
Ssu4g1293 1840 Coils Coil 258 320 - -
Ssu4g1293 1840 Coils Coil 230 250 - -
Ssu4g1293 1840 PANTHER PROTEIN NETWORKED 4A 1 1840 - -
Ssu4g1293 1840 Coils Coil 587 646 - -
Ssu4g1293 1840 Coils Coil 1250 1298 - -
Ssu4g1293 1840 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Ssu4g1293 1840 Coils Coil 1476 1496 - -
Ssu4g1293 1840 Coils Coil 1026 1046 - -
Ssu4g1293 1840 Coils Coil 1712 1732 - -
Ssu4g1293 1840 Coils Coil 1362 1382 - -
Ssu4g1293 1840 Coils Coil 1306 1326 - -
Ssu4g1293 1840 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Ssu4g1293 1840 Coils Coil 937 957 - -
Ssu4g1293 1840 Coils Coil 1166 1207 - -
Ssu4g1293 1840 Coils Coil 814 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1293 Ssu-Chr4 21169871 21176459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1293 - - gmx:100810726 3105.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1293 4 21169871 21176459 Ssu4g1293 4 21169871 21176459 ECH
Ssu4g1293 4 21169871 21176459 Ssu7g2136 7 42097794 42104792 PCT