Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1289 ATGGAACCAAAGTGCAGCATAAATTGTCGCCGGTCGGAGTTTGTTCCGACCCCTCTGCCGGAGAGTCCTCGCGTGCCGATGGAGTTTCTGTCACGGTCATGGAGTGCCTCAGCTCTTGAGGTCTCCAAAGCTCTTGCGCCTCACCACCCACCTCTTTCTTCTTGCATGCCTAATTCCAACACTACTACTAACAACACTTCCATTCCCGAAGAAACTGCTGCTTCCAACAACAACTACTCTCTCTCTGAGGACTTCTCCACTCTCCCTAAGAACCAGTTCTCTTTCGCTTCCTCTGCCACCTCCCAGCTCGTCCTTGAACGCATTATGTCACAGTCGGCGAGAGAGGAAGTGTCTCCGTTAACGTCAGGTAGATTGTCTCACAGCAGCGAGCCGTTGAATGGTGGTGGTTCCTTAACCGGAACAGACAGTCCTCCAATTTCACCTTCTGATGAATTTGACGACGTTGTTAAGTTTTTTCGGGCAAACAATTCCATTCACCCGTTATTCAATGGCGGACGAACCAGTGCAACTATTGGCAATGGCACGGCTTGCTCAGGACCTAAAACTGTTGGGAGATGGCTGAAAGAccgaagagaaaagaagaaagaagaaaacagaACCCATAATGCTCAGCTGCATGCTACTATTTCAGTGGCTGCAGTGGCTGCTGCTGTTGCGGCCATCGCGGCAGCAACAGCAGGCTCATCTGCACCCAGCAAGGACGAGAAGATGGCAAAGACAGACATGGCTGTTGCTTCTGCAGCCACATTAGTTGCCGCACAGTGTGTAGAGGCTGCTGAAGCAATGGGGGCTGAGCGTGACCACCTTGCTTCTGTGGTCAGCTCTGCTGTGAACGTCCGTTCTTATGATGATATCACTACTCTTACTGCTGCAGCCGCCACAGCTCTACGTGGAGCAGCAACATTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATTGCCACAGTGACACCACTAGAGAGGGGAATAGGGGGGATTGGACTATGTGGTAAAAGTATTAACAGCAATACCAGCAATACCAGCACCAGTGATAGTGGGGAAATTTTCAACGGAGAAAATTTTCTAGGTGCCTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACAGGCcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACcattaccaaaaagaaaaagaATGTTGTGCTAGATGTATGCACGGATTTACCAGCATGGTCAGGAAGACATCTGTTTGATGATGGTGAAAAGCGACGGTACTTCGGATTGAAGACAGACTCAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAGAGAGAATATGATATCTGGACACAAGGGGTTTCAAGGCTTCTCTCCATTGTTGCACAAAGACAAAACAGATATGGGAATTGA 1470 0.4707 MEPKCSINCRRSEFVPTPLPESPRVPMEFLSRSWSASALEVSKALAPHHPPLSSCMPNSNTTTNNTSIPEETAASNNNYSLSEDFSTLPKNQFSFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRTSATIGNGTACSGPKTVGRWLKDRREKKKEENRTHNAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSYDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEIFNGENFLGACSQELLAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDVCTDLPAWSGRHLFDDGEKRRYFGLKTDSRGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNRYGN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1289 489 PANTHER EXPRESSED PROTEIN 1 489 IPR040269 -
Ssu4g1289 489 MobiDBLite consensus disorder prediction 115 151 - -
Ssu4g1289 489 Pfam Auxin canalisation 20 328 IPR008546 -
Ssu4g1289 489 MobiDBLite consensus disorder prediction 53 73 - -
Ssu4g1289 489 Pfam Plant pleckstrin homology-like region 375 480 IPR013666 -
Ssu4g1289 489 PANTHER AUXIN CANALIZATION PROTEIN 1 489 - -
Ssu4g1289 489 MobiDBLite consensus disorder prediction 48 73 - -
Ssu4g1289 489 MobiDBLite consensus disorder prediction 115 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1289 Ssu-Chr4 21075326 21078792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1289 - - gmx:100805743 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1289 4 21075326 21078792 Ssu4g1289 4 21075326 21078792 ECH
Ssu4g1289 4 21075326 21078792 Ssu7g2145 7 42208652 42212030 PCT