Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1275 ATGCCTTTCACAATGAAGATTCAACCAATTGATTCGCACGTGCCCGAGGAGAGGACTAGGCTTGAGCCGGTGAAGCCGGTGGTGAAGTCGCGGCTGAAGCGGCTCTTCGAGCGCCAGTTCTCCGGCGTTCTCCGGAATTCCGCGGCGGAGAAGATCGGCGGCGAGGAGCCGCATTCCGGCAAAGACGTGTCGGCTGATTTCGAACCGACCTCGGTGTGTCTGGCGAAAATGGTGCAGAATTTCCTGGAAGAGAATCCCGAGAAGCACTCCGTTTCCATGAAGTGTGCGCGTAACCGCTTCAACAGCTTCGAGGATAGCTCCGACGCCGAAACGCACGCGCTTGGTGGTTTCGGCGAGTCCAGTTATTCCTCCTCCGGTGAAGCGCAGGAAATCCTCAAGGGTTTGGTGACATGTGCGAGTGTCTGCGAGAGGAATTTGCTAGCGGACACCACTAAGATCATTGAGAAGAACAAGACAGCGTGCAAGCGCAAAGACGATTGCTGTAGAAAGATCGTTACGGAAGGATTGTTAGCTCTCGGATACGACGCTTCCGTTTGCGAATCTCGCTGGGAAAAATCAACTTTCTGCCCCGCcgGGGAATATGAATACATTGATGTGATAATGGGAAAGGAGCGGGTGGTGGTTGACGTTGACTTCAGATCAGAATTCGAGATTGCTCGACCCACCAAGGCATACAAAGCGATCCTCCAAACCCTTCCGTACGTATTCGTCGGCACGTGCGAACAGGTGCAGAGCATCGTAGCCATCGCGTCAGAGGCGGCGAAACTGAGTCTGAAGAAAAGGGGCATGCACGTTCCGCCGTGGAGGAAAGTGGAATATGTCAGAGCGAAGTGGCTCTCTCCTTACACGCGAACTTGTTCGCGTGGAGTCATAGAGGGAACCGAAGAGAAAAAACAGCTTGAGAAGGCGCTGGTGTTAACTGCGTGTGGAAGTGGAAGTTCCCGTGACGTTGATGAAAAGTCAAAGTCAAAGCTGGTGGTTCAAAAGCCACCGGAGATGAAACCCAAGAGTTCACAGTCCGGTTTGGCAGCTGTCTTCCATGAAAACCcgtga 1074 0.5289 MPFTMKIQPIDSHVPEERTRLEPVKPVVKSRLKRLFERQFSGVLRNSAAEKIGGEEPHSGKDVSADFEPTSVCLAKMVQNFLEENPEKHSVSMKCARNRFNSFEDSSDAETHALGGFGESSYSSSGEAQEILKGLVTCASVCERNLLADTTKIIEKNKTACKRKDDCCRKIVTEGLLALGYDASVCESRWEKSTFCPAGEYEYIDVIMGKERVVVDVDFRSEFEIARPTKAYKAILQTLPYVFVGTCEQVQSIVAIASEAAKLSLKKRGMHVPPWRKVEYVRAKWLSPYTRTCSRGVIEGTEEKKQLEKALVLTACGSGSSRDVDEKSKSKLVVQKPPEMKPKSSQSGLAAVFHENP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1275 357 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 169 292 IPR006502 -
Ssu4g1275 357 Pfam PDDEXK-like family of unknown function 76 291 IPR006502 -
Ssu4g1275 357 MobiDBLite consensus disorder prediction 322 336 - -
Ssu4g1275 357 PANTHER RNA POLYMERASE SUBUNIT BETA-BETA PROTEIN, PUTATIVE (DUF506)-RELATED 25 352 - -
Ssu4g1275 357 PANTHER OS03G0796600 PROTEIN 25 352 IPR006502 -
Ssu4g1275 357 MobiDBLite consensus disorder prediction 317 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1275 Ssu-Chr4 20768650 20769959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1275 - - gmx:100796711 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1275 4 20768650 20769959 Ssu7g2166 7 42517410 42518716 PCT