Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1240 ATGTTTAGCAGGCCAAGGGGTGCCAGTGCTTTTAGTATATTCAAATGGAAACATCCAGCTGCTTCATCTCTGACAACAGGTTTACTTCAGGAAGATCCGCCGGAGATTGAATTGTCTGATTATGGAAAAATCCCTAGTCCAGGCAGTGAAAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGTGGAACCAATTGCCGATTTGGATCTGTTTTTTGAAAGACTTTACAGCTACTACTGTGAGAAAGGGCTATGGTGCATCATTATAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGTTTTTCaggattttttttactatatattgaTTGGAATGGGCTCCGTAATGCGAAGTGTGGGATGGATGCGGTTGAATCTGGAATTAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTAACCCCACTAACACTTACCAAAGCTATTATTGTTGGATACTTGGGAATATTTTCTATCTATTGGATTTTTTGCTTCTTGAgattctttgctcaactaaagGATACTCTGGAAATCCGTCATTTTTACTACAACAGTTTGCATGTTACTGACAATGAAATTCAAACGATGCCCTGGGCTACAATTCTTGAAAAAGTTGTTCTGGTACAAAGGTCTCAACAACTTTGTGTGGTAAAAGATCTTTCTGCCCATGACATTGTCATGCGATTGATGCGGAAGGAGAACTACTTAATCGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCTATTTCACAGTGGTTTCCAGGTGCTGGTCCTACAGTGAACTCTAGTTCTAATGGAACACAGAATCGTTTAATACTAACCAAGACTCTTGAGTGGACTTTGAATTGGTGCATCCTGCAGAGCATGTTTGATCgAAACTTTTGTGTCAGGAGGGATTTTGTGTCAAATCCAAAGACATTACGAAAGAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTATCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTCTTGAGGCATGCTGAACAATTTTATAATCACCCTAGCACGGCATCATCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAATTCAATGAGGTGGATCATCTCTTCAAGCATCGGATTAATAGCAGTGTATTGCATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCATTGCAAAATTCATCGCTTTTGTATCGGGTGGCTTTGCTGCAATTCTGATCATCATTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCCATTAGCCGGGCTGCCATTACCGATGAGCTTCTGCTCTTAGACCCTGAAGGAGCAACGTCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGGGGCAAAGAAAGTACTGAAATGGTCCGTATTGAGTTTGAAACCTTATTCCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATTTTCCTCACTCCATACTTACTTCTGTTTATTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTTATTGCTGATTTCACTGTAAATGTTGAAGGTGTTGGCCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACAGTCATTATGGTTCCCCTTGCAATGCACCTTGTAGCCGGAGGAGTTCCCAGGGGAAGATGGAGAAATCATTACTAAGCTTTCAGAGTAGTTACCCATCATGGGAACCAAGTGCACAGGGGAAGCAGTTTTTGGTAAATCTTAGGAGATTCAGAGAGGAAAAGTTACCAGTACATGGAAACATACATGCACCTTCCCCTCCAAGAATGTGGAGGGGTAGTCCCACCAATATGGGAAGCAATGGAGACAGAAACAGGTTTATATCCACGGAAATGCCATACAGTACTTTTGCAACTGGCAATCACTTGGGTTCCTTGTGGCTGATTGAAGCCAACCAAAACAATCATCCCTATCTTCTTGATTGGTACTATACATCCCGATCTCATGACATGAATCTGGGAGATGTTCCTTTAGAACCGTTTGGAGTAATAGAGCATCGTTCTAGAGAGTGTTTGATGCCCTCCAACTTGACACAGAATGAAACTGAGTTTGAGGAATACTCAAATGAGTATCGTGAAGGTCGGGCTGGATCTCATCTTGGGACTTCCACATCTGCTCCCATCTTCAGGGAAAGCCTAATTCAGGATCAAAGTTATAATGAACTGTCCCGTACTACCAGGAGTCATTGGTGGGCTAGAAGTCGCCCACAGGGTGGACAGACTCAGACAAGCTTTTTTGAACCTCCAGATTTCAATCAcgaaacatataattattatgataagtTTTCTGATAGAGGGTCAGAGGATCAAGATCATGATCAACGCTTGTACTCTAGAGATAATCACAGGTTATCTAGAACATACACAGATGACTTAGGGGCAGGGGAATTTAATCTTCATTTTGATGATATTTATAGCAGACCTCCAGAAACTCCCCCTGCAAGCTTTTGA 2577 0.4098 MFSRPRGASAFSIFKWKHPAASSLTTGLLQEDPPEIELSDYGKIPSPGSESPSGLLNGESLNVEPIADLDLFFERLYSYYCEKGLWCIIIKWIVELLSLGFTICFSGFFLLYIDWNGLRNAKCGMDAVESGIKPCDLAKEALHQHPLTPLTLTKAIIVGYLGIFSIYWIFCFLRFFAQLKDTLEIRHFYYNSLHVTDNEIQTMPWATILEKVVLVQRSQQLCVVKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPTVNSSSNGTQNRLILTKTLEWTLNWCILQSMFDRNFCVRRDFVSNPKTLRKRLMVVGLAMLLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVDHLFKHRINSSVLHASDYLKQFPSPIISIIAKFIAFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAITDELLLLDPEGATSMVVQHTHYMPKRWRGKESTEMVRIEFETLFQYTGMMLLEEMASIFLTPYLLLFIVPKRVDDILQFIADFTVNVEGVGHVCSFSTFDFQEHGNSHYGSPCNAPCSRRSSQGKMEKSLLSFQSSYPSWEPSAQGKQFLVNLRRFREEKLPVHGNIHAPSPPRMWRGSPTNMGSNGDRNRFISTEMPYSTFATGNHLGSLWLIEANQNNHPYLLDWYYTSRSHDMNLGDVPLEPFGVIEHRSRECLMPSNLTQNETEFEEYSNEYREGRAGSHLGTSTSAPIFRESLIQDQSYNELSRTTRSHWWARSRPQGGQTQTSFFEPPDFNHETYNYYDKFSDRGSEDQDHDQRLYSRDNHRLSRTYTDDLGAGEFNLHFDDIYSRPPETPPASF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1240 858 Pfam Autophagy protein ATG9 63 557 IPR007241 GO:0006914
Ssu4g1240 858 PANTHER APG9 AUTOPHAGY 9 1 858 IPR007241 GO:0006914
Ssu4g1240 858 PANTHER AUTOPHAGY-RELATED PROTEIN 9 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1240 Ssu-Chr4 19872959 19878801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1240 K17907 - gmx:100777405 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1240 4 19872959 19878801 Ssu4g1240 4 19872959 19878801 ECH
Ssu4g1240 4 19872959 19878801 Ssu7g2213 7 43433751 43439250 PCT