Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1232 ATGCTTTTTGGGGTAGCCGGCGAGGCATGGTGGATTCCTTATTTCTCCATGGATATGCAGAAGAAAGAAGGTGAAGCTCCCGTGTTCTGGTTTGAAACCTCTGACTCGGTTTGTCGCCGACATCAGTTTGAACACGATGGTCGACTCTCCGTAGTGATTGTTGATGATTCCAGGCCCCTATACCAAAGGGTGGCTGGATCtttcatgaataaatttttccCCTCGGGATATCCATACagTGTGAATGAAGGCTATCTTAGATACACACAGTTTCGAGCCATGCAACATGTTACCAGTGCAGTGATGTCGGTACTATCAACTCAGTCCTTGCTATTTGCTGCGGGGTTGCGGCCCACTCCTGCACAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGAGTGCAACATGTAGGGAAGCTAATATGTAGCAATTGGGGTGCTAGAATGGATTCTGAGCCTAAACGTTGGAGACTACTAGCTGATGTGCTCTATGATATAGGCATTGGCTTGGAAATGCTTTCTCCATTATGCCCGCATCTTTTTCTTGAAATGGCAGGCTTAGGAAATTTTGCaaagGGGATGGCAGTTGTTGCAGCGAGAGCAACAAGATTGCCTATATATTCTTCATTTGCTAAAGAAGGAAATCTCAGTGACCTATTTGCTAAAGGAGAGGCTTTTTCAACTCTCTGTAATGTTGTTGGAATTGGAGTTGGAATTCAGTTAGCATCTACTATCTGTGCATCAACGCAGGGAAAGTTGCTTGTGGGTTCTCTCCTTTCAATTATACATGTATACAGTGTGTCTGAAGAAATGAGAGCAACTCCTATCAATACCTTGAATCCACGAAGAACTGCAATGGTTGTGGCTGATTTTCTCAAGGCAGGAATTGTATCAAGCCCTGCTGATCTAAGATATAGAGAAAATCTGCTGTTTCCTCTGCAACTCAAAGAAGATGCTGGAAATGTAAGAGTAGGGAGGGATGTGCACAAGGTCATTAAGCCTTCCAGGCTTCTTGAACTAAAACAAGTGTTCCCTAAGGAGaagtttcttttaaattttggtaataaaTGCTTTGACATGGTATTGGAGCAAGATGCTAGTGGTGAAGATGCATTGAGAGGGTGGCTAGTTGCTGCATATGCTGCACAAGTTGAGAGTTCCTCTCATGAGCTCAGTGCTAGTGTCCTGCATGAGGCTTATGAGAAAATGAATGGTGTCTTTCCTGTATTCTTAAAAGAATTACAGAACAAAGGGTGGCACACTGATCGGTTTTTGGATGGTACTGGGAGCCGTTTTGCATTTTAG 1305 0.4261 MLFGVAGEAWWIPYFSMDMQKKEGEAPVFWFETSDSVCRRHQFEHDGRLSVVIVDDSRPLYQRVAGSFMNKFFPSGYPYSVNEGYLRYTQFRAMQHVTSAVMSVLSTQSLLFAAGLRPTPAQATAVSWILKDGVQHVGKLICSNWGARMDSEPKRWRLLADVLYDIGIGLEMLSPLCPHLFLEMAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAFSTLCNVVGIGVGIQLASTICASTQGKLLVGSLLSIIHVYSVSEEMRATPINTLNPRRTAMVVADFLKAGIVSSPADLRYRENLLFPLQLKEDAGNVRVGRDVHKVIKPSRLLELKQVFPKEKFLLNFGNKCFDMVLEQDASGEDALRGWLVAAYAAQVESSSHELSASVLHEAYEKMNGVFPVFLKELQNKGWHTDRFLDGTGSRFAF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1232 434 Pfam Vitamin B6 photo-protection and homoeostasis 63 294 IPR006968 -
Ssu4g1232 434 PANTHER PROTEIN ROOT UVB SENSITIVE 2, CHLOROPLASTIC 20 434 - -
Ssu4g1232 434 PANTHER RUS1 FAMILY PROTEIN C16ORF58 20 434 IPR006968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1232 Ssu-Chr4 19609245 19613007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1232 - - gmx:100820508 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1232 4 19609245 19613007 Ssu4g1232 4 19609245 19613007 ECH
Ssu4g1232 4 19609245 19613007 Ssu7g2221 7 43819695 43823440 PCT