Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1215 ATGTCGGGGTACAATGTGTTATGTTACAAGCCATCAGTGACCATGTATCTTCAGTTTTACATAAATGAGAATGGTGACAAAGTCTACACCACTAAGAAAGAGTCGCCGCTAGGGCTACCTACACAATCTGCTCATCCAGGGACattattggaaattaaatttaatgccACGACCAAGACGACTTCTAGTTCAGTTGCACTCGCAGCACTCGTCAGTGGAAGTCGAAGTCGTCGATTGCCAAGTGCTACCCTTCTCATCTTCGTGCTGCTTCCGCGAATGGCCCGACACCTAGGAGGATTACTGGCGCTACTTTTCGCTGTTTCGATCTCCGGAGCCGTCACGATTCTTGGCCCTGTGTCTGATGCTCATCGTTCCACCGCGTTAGAGCTCTTCGATGGATCCTTTTCAAGTTTAGAAGATGCCTATGAGGCCCTAAGAGTTTTTGAGATTCTTGCGATTGGGAATAAGCCTGATGTGAGCGCAACCACTTGTCAGAAAGTGGTGAAAAATCTTGGGTCTTCATCCCCTGTGAAGGATTTGTTCTATGCATTGAAGGTTAATGGCATATTAAAATGCAAGGTTAATGGGAATGTTTTCAAGGATATTGCTTCAAGACTTAAAGCCACTGTCAATGATGCGAGTACTTTGGTTGACATGTACTATTCAATAGGAAGTTTGGTTCTTATAAAGGATCAGGCTTCTGATGTTGATGTACTTCTTACTGATGCTGATGGGACCTTCCATTCAATCAAGGCTCTGAGCCAAAGTGATGGAAGATGGCGGTATAGTTCTGATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCACTTGAAGCACTGGCTGGAGTGATCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTTAATACAgtgaaaaatgatatattgaagcTTTTTGACAGCATTGAGAAATATGATGATGGAACCTTCtattttgatgagaaatttgTTGTTGGACGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCCGTTGTTCGAGGGGTTACAGCATTTGCTGCTGTAACTTctggaaaaataaatCTTCCAGGGGATAAAATATTGGGTTTAGCAAAATTTTTCCTGGGCATTGGAATCCCAGGAGATGCCAAGAACTTCTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAACAACAGGGTTTCCATCCCATTGGTACTGTCACTTCCTGCAACAGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTAAATACATTACTTGGTTCAGCTCCTCCACCTTTAACAGTTAAGCTTGTCCAAGCTTTCCGCACTGATGCTAAAGATTCTGCTGTTATTGAGAGCAAGGAGCTCCAATATGATCAAAATAATGGAATTCATGTCTTGGAAGTTTTCCCAGATAATGTGGATGTGGGAACCTATGTGTTTGTTTTTGAGATTGTACTTCATGATTCTGCTGGTGAAAAAGTTTATGCTACTGGAGGTCAAATTCATGTACCAATATTTGTCACTGGCTTTATTAAAGTCAGCAATGCAGAAATTGCAGTTCTTGACAGTGATCTTGGAAGCGTTGAAACCCAGAAAATGCTAGATTTGGCTGGAAATGATGTTGTTTCACTCTCAGCTAACCACTTGCAAAAGTTGCGCTTTTCTTTCCAATTGACAACACCTCATGGTCATGCTTTTAAGCCTCATCAGGCATTTTTCAAGTTGAGGCATGAGACAAAGCATGAACACATCTTTGTGGTCGGAAATACTGGCATGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTCTCAGGCATATATGACATTGAGCTGACTGTTGGTGATGCTGTCATGGAGAACTCTTTCTTACGGCCACTTGGTCATGTTGATTTAGATCTTCCAGAAACACCTGAGAAGGCAGCCCGTCTTCCTCCACTCCCTGTTGATCCTTACTCAAGATATGGGCCCAAAGCTGAGATAACCCACTTATTCAGGGCTCCTGAAAAGCGACCACCCCAAGAACTCTCTCTTACTTTCTTGAGTTTGACCCTTCTGCCATTTATTGGCTTTTTGGTTGGGCTGTTACACCTGGGGGTGAACTTGAAGAATTTTCCTTCTTCAGCAGTACCTGCTACATATGCCATCCTATTCCATCTTGGCATTGCAGCAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAATTGTAGGATTTTTGGGAGCTTTTCTGATGTTTGTGGGACACAGAATTCTTTCACATCTcgcttcaacatcatccaagTTGAAGTCTGCATGA 2343 0.4076 MSGYNVLCYKPSVTMYLQFYINENGDKVYTTKKESPLGLPTQSAHPGTLLEIKFNATTKTTSSSVALAALVSGSRSRRLPSATLLIFVLLPRMARHLGGLLALLFAVSISGAVTILGPVSDAHRSTALELFDGSFSSLEDAYEALRVFEILAIGNKPDVSATTCQKVVKNLGSSSPVKDLFYALKVNGILKCKVNGNVFKDIASRLKATVNDASTLVDMYYSIGSLVLIKDQASDVDVLLTDADGTFHSIKALSQSDGRWRYSSDNPESSTYAAGLALEALAGVISLASSEIDQSRVNTVKNDILKLFDSIEKYDDGTFYFDEKFVVGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIGIPGDAKNFFNQVESLALLENNRVSIPLVLSLPATVYSLSKKDQLKVRVNTLLGSAPPPLTVKLVQAFRTDAKDSAVIESKELQYDQNNGIHVLEVFPDNVDVGTYVFVFEIVLHDSAGEKVYATGGQIHVPIFVTGFIKVSNAEIAVLDSDLGSVETQKMLDLAGNDVVSLSANHLQKLRFSFQLTTPHGHAFKPHQAFFKLRHETKHEHIFVVGNTGMKFEIILDFLGLVEKFYYLSGIYDIELTVGDAVMENSFLRPLGHVDLDLPETPEKAARLPPLPVDPYSRYGPKAEITHLFRAPEKRPPQELSLTFLSLTLLPFIGFLVGLLHLGVNLKNFPSSAVPATYAILFHLGIAAVLLLYVLFWLKLDLFTTLKIVGFLGAFLMFVGHRILSHLASTSSKLKSA 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1215 780 PANTHER RIBOPHORIN II 86 780 IPR008814 GO:0006487|GO:0008250|GO:0016021
Ssu4g1215 780 Gene3D - 15 44 - -
Ssu4g1215 780 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 86 780 - -
Ssu4g1215 780 Pfam Oligosaccharyltransferase subunit Ribophorin II 101 772 IPR008814 GO:0006487|GO:0008250|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1215 Ssu-Chr4 19283228 19302935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1215 K12667 - gmx:100780415 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1215 4 19283228 19302935 Ssu4g1215 4 19283228 19302935 ECH
Ssu4g1215 4 19283228 19302935 Ssu7g2234 7 44084757 44092110 PCT