Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1211 ATGTCCAACAACAATAAGGTGAAGGGCATCCTTAAAGGCCTAAGATTCATTTCTCAGATATTCGataatgatgaaaaagaaggagaaattcAGATTGGTCATCCCACAGATGTAAAGCATGTGGCGCATATCGGATGGGATGGTCATGGTCCCTCTGAAAATAATCCCAGCTGGATGAACGAGTTTAAATCTGTCCCAGGGAATTCATCTGCACCTCTAAATCATAATGGAGATATTCATAGCAAAGGACCCGACAATTCAGTCCAAAGGGCCTCTGAAGATTCAATGCGAAGAGGTTCAAGGTCTGTGAATTGTGAAGGCCAAGAGAAGGACTTACATGAGTTGCCCAAATCATTTAAGCGGCAATCAAATTCAATGGGGAACATAAGAGAGTCCCATGCAAAGGAAAAGTCAGACAGGCCAAGGCAACCAAAAAAGTCATCCAAACCTTCACAACCAAATGATTTATGCAACGGATCCAAACCCACGGAGCAACCCATGCACAGGGATATGGATTCACTCCAACTCCAAAGGAGTGATTTGCCGCCGAAAAAGTCTCGCCCCAAAATGTTAAAAGATGGTtccaatggtggtggtggctcaTCCAAATCGAGATCAAAAGCCAATTCTAGGGACTCCAACTCCAATCAAGAAGGCCATTCTAGATCCAGTTCCAAATCTAGGAACAAACGCGGGTCCTTTGATGAAGATGGACAATTTGAGAGCGGGTCTAGTGAAAATGTACTGAAAAGTTACCCAAATTAG 765 0.4092 MSNNNKVKGILKGLRFISQIFDNDEKEGEIQIGHPTDVKHVAHIGWDGHGPSENNPSWMNEFKSVPGNSSAPLNHNGDIHSKGPDNSVQRASEDSMRRGSRSVNCEGQEKDLHELPKSFKRQSNSMGNIRESHAKEKSDRPRQPKKSSKPSQPNDLCNGSKPTEQPMHRDMDSLQLQRSDLPPKKSRPKMLKDGSNGGGGSSKSRSKANSRDSNSNQEGHSRSSSKSRNKRGSFDEDGQFESGSSENVLKSYPN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1211 254 CDD CRIB 30 64 - -
Ssu4g1211 254 Gene3D CRIB domain 28 77 IPR036936 -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 53 90 - -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 238 254 - -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 223 237 - -
Ssu4g1211 254 ProSiteProfiles CRIB domain profile. 32 45 IPR000095 -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 197 222 - -
Ssu4g1211 254 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 7 216 IPR044510 -
Ssu4g1211 254 Pfam P21-Rho-binding domain 31 64 IPR000095 -
Ssu4g1211 254 SMART PBD_5 32 65 IPR000095 -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 147 161 - -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 130 146 - -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 91 118 - -
Ssu4g1211 254 MobiDBLite consensus disorder prediction 44 254 - -
Ssu4g1211 254 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC7-LIKE ISOFORM X1 7 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1211 Ssu-Chr4 19226091 19227892 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1211 - - gmx:102666244 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1211 4 19226091 19227892 Ssu7g2243 7 44213548 44215479 PCT