Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1186 ATGGGTACGCTCAGAGGAAAACACCACACGCTACTCTTTCTTTTTACAGCACTCCTTCTCGTTCCCACACTCGCCTCACCTGCAGACAACACAAATTTGATCTACAAAGGTTGCGCTGACCAGAAACTGCAAGACCCGTACTCGCAGAACCTCAAACCGCTGCTAGACTCCTTGGTGGCGGAATCGGCGCAGAAGGGTTTCGCCGCGACTACCCAGAACGCGCTCAGCGGCGCGTACCAATGCAGAGGGGACCTCACGAACTCCGACTGCTACAGCTGCGTGAGCAAGATTCCGGGCATGCTGGACCGGCTGTGCGGTGACGTGGTGGCGGCGCGGGTCCAGCTCAGCGGGTGCTACCTGCGGTACGAGGTGGCCGGGTTCAAGCAGGTCCCCCCGACGCAGATGCTGTACAAGGTCTGTGGGTCCCGGAAGGTCGGTGACGGCGGGGGTTTCGAGGCGAGGAGGGACTCGGCTTTTGAGATGGTGGAGAACGGTGTGCAGAGTAGTGGGAGCTTGTTCTACACGGGGAGTTACCAGAGTCTGTATGTGTTGGGGCAGTGTGAGGGTGATTTGGGAAATGCCGATTGTGGGGCTTGTGTTAAGAGCGCTGCGGAACAGTCCAAGGTTGAGTGTGGTGACTCTATTTCTGCGCAGATTTATCTCCACAATTGCTATATTAGTTATAGCTTTTACCCCGATGGAGTTCCCACCCTGTCATCTTCACCAGTTGTTTGTGTCATTGATTTAAATATTGGGCAAAATGGCACTGGGGGATTTAAGAAGTGGGGTTGTGAAAGGGATTCGTGGGATGTGGGTAGATCGCAGCATTATCCATCACGAACGGCACCAGATCTAACAGTAGCATCATGGGCCATGGAGCCGCCAACTCCACTGCTCCGTTATATAAAAGCAGCACCTCAAGTTTTTATTGCCCTACTTCGCAAATTCCAATTCCTCGATTTACCACCAAAACCAGCCACCCGAGGTTTCAATTTCGTCTTCGGAACAAGCAGGCTCAACCTCTTCTCTGCGACGAAGCCGTTTCTCTCCCTCGAGGTAGAGACCTTTTGTTCAAGCATGGGAGACAGTGAATCAGTGGTTACCGAAACATCTGGTGCTGAGGCATATGCTTCGGCTGGTTATGCTGACACCGGGTTGAATCCTGTGCTCGAGGCAGGTGCTACGGTTGATCAGTCTGCTGGAGAAGCTGCTCAGGCCACTTCAACTTATGGATTTGGTTATTCTAATGTTGGTGATGGGAATGCATACGCTGGGGATCCAAATTCTGTTCTACAACAAGCTCAATTCAATGCAACTAATGATTCCAAGCAAGCTGCGGGAGCTACTGATGCTAATGATGCCTCCACTGCGCTTGGAAACACTCCTGCTGAGTCTACTTTGGTTTCTGACTACAATTCATCTGTAAATGGTGATGTTGTCGGTGAAGTGGCAAATGCAGCAGGACTTGAAAACGGGAATGCATTGGAGAATGTTGATGGGTCGGCTGATGAGAAACAGCTTGCAGATGGTTATGCTGCCTTGTCCGCTGAAGAAGACCGACTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCACTGCCTGGACTGCCTTGATTGAAGAGACAGAGAAGGTAGCAGAGGACAATATTCTGAAGATTCGCAGAGTCTATGATGCTTTTCTAGCAGAATTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGTCTTGGCTCTATTGATAAAGTTGTTGAAGTTTATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAACACGTATGGGGATCCGGACACTGTTCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAGCAgattatctttcttttccccTCTGGGATAAATACATTGAATATGAGTACATGCAGCAAGACTGGGCCCGCCTTGCTATGATCTACACCAGAATATTAGAGAATCCAAATCAGCAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAATCGATCTTTGTCAGAGTTACGGACTGCTGATGAAGCTGCTGCAGTGGCAGGTGTTGCTTCAGAGGCCACTGGTCAAGCTATTGAGGGAGAGGTTCATCCTGATGGTGCAGAGTGTTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGACGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTACGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGACCCCTCAATGTTGGAGAGCTTGAGAATTGGCATAACTATCTGGACTTCATAGAAAGGGAAGGTGACTTAAGCAAGGTAATAGATAGTTTCTTGTAA 2424 0.481 MGTLRGKHHTLLFLFTALLLVPTLASPADNTNLIYKGCADQKLQDPYSQNLKPLLDSLVAESAQKGFAATTQNALSGAYQCRGDLTNSDCYSCVSKIPGMLDRLCGDVVAARVQLSGCYLRYEVAGFKQVPPTQMLYKVCGSRKVGDGGGFEARRDSAFEMVENGVQSSGSLFYTGSYQSLYVLGQCEGDLGNADCGACVKSAAEQSKVECGDSISAQIYLHNCYISYSFYPDGVPTLSSSPVVCVIDLNIGQNGTGGFKKWGCERDSWDVGRSQHYPSRTAPDLTVASWAMEPPTPLLRYIKAAPQVFIALLRKFQFLDLPPKPATRGFNFVFGTSRLNLFSATKPFLSLEVETFCSSMGDSESVVTETSGAEAYASAGYADTGLNPVLEAGATVDQSAGEAAQATSTYGFGYSNVGDGNAYAGDPNSVLQQAQFNATNDSKQAAGATDANDASTALGNTPAESTLVSDYNSSVNGDVVGEVANAAGLENGNALENVDGSADEKQLADGYAALSAEEDRLWNIVRANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMWLHYCIFAINTYGDPDTVRRLFERGLAYVGADYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFSSFKELAGNRSLSELRTADEAAAVAGVASEATGQAIEGEVHPDGAECSPKSVSAGLTEADELEKYIAIREEMYKKAKEFDSTIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKVIDSFL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1186 807 SUPERFAMILY TPR-like 525 685 IPR011990 GO:0005515
Ssu4g1186 807 Gene3D Tetratricopeptide repeat domain 523 693 IPR011990 GO:0005515
Ssu4g1186 807 PANTHER PRE-MRNA-PROCESSING FACTOR 39 395 805 - -
Ssu4g1186 807 Pfam Salt stress response/antifungal 147 230 IPR002902 -
Ssu4g1186 807 Pfam Salt stress response/antifungal 42 123 IPR002902 -
Ssu4g1186 807 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 395 805 - -
Ssu4g1186 807 ProSiteProfiles Gnk2-homologous domain profile. 133 233 IPR002902 -
Ssu4g1186 807 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Ssu4g1186 807 Gene3D - 30 127 IPR038408 -
Ssu4g1186 807 Gene3D - 132 232 IPR038408 -
Ssu4g1186 807 SMART hat_new_1 617 652 IPR003107 GO:0006396
Ssu4g1186 807 SMART hat_new_1 582 614 IPR003107 GO:0006396
Ssu4g1186 807 SMART hat_new_1 548 580 IPR003107 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1186 Ssu-Chr4 18900756 18935045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1186 47 232 Receptor kinase-like Gene Family AT4G21230 24.352 5.97e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1186 K13217 - gmx:100787373 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1186 4 18900756 18935045 Ssu4g1186 4 18900756 18935045 ECH
Ssu4g1186 4 18900756 18935045 Ssu7g2256 7 44496688 44497979 PCT