Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1155 atGTCCCGTGACTGTGATGTCCTTCCTGAAAACACCGTTGTTGTGGGGTGTGGGGCGGTGTCGGTGGATTTCTTGGCCACCGTTGCAGCTTATCCCAAGCCAGATGACAAAATCAGAAGCACCTCCTTCAAGGTTCAAGGAGGTGGCAATGCAGGCAATGCCTTAACCTGCGCCGCTCGCTTAGGCCTCAAACCAAGACTCATCTCCAAGGTTTCAGATGACACTCAAGGCAGGGATATATTACACGAGCTAGAGGTTGATGGTGTAGATACATCCTTTATGGCCGTTTCTCAGGAGGGCACTTCACCATTTACGTATATCATTGTGGACAGCCAAACTAAGTCCCGCACTTGTATACATACCCCGGGATTTCCTCCAATGAAGCCAGAAGATCTTCCTGAGTCAAGTTTGCTAACTGCATTGAATGGAGCAAGAATTGTTTATTTTGATGGGAGATTGCATGAAACTGCCCTAGTTGTTGCACATGAGGCAGTTAAGAAGAATATACCTATCTTAATGGATGCAGAAAGGCTGAGAGAAGGGTTGGATGATCTCCTGAAATTAGCTGATTATGTCGTGTGCGCTGCACGGTTTCCACAGGCATGGACAGAGGCACCAACAGTTCCTAAAGCACTTGTTTGTATGCTTTTAAGGTTGCCCAACATCAAATTTGTGACTGTCACTTTGGGAAAAGATGGTTGCATAATGCTTGAGAGAAGTGTTAACGGTACAGATTCCCAtttcttccaatttttatttgcttttgaaTGTTGTGTTTGTAGGTGCTAG 789 0.4461 MSRDCDVLPENTVVVGCGAVSVDFLATVAAYPKPDDKIRSTSFKVQGGGNAGNALTCAARLGLKPRLISKVSDDTQGRDILHELEVDGVDTSFMAVSQEGTSPFTYIIVDSQTKSRTCIHTPGFPPMKPEDLPESSLLTALNGARIVYFDGRLHETALVVAHEAVKKNIPILMDAERLREGLDDLLKLADYVVCAARFPQAWTEAPTVPKALVCMLLRLPNIKFVTVTLGKDGCIMLERSVNGTDSHFFQFLFAFECCVCRC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1155 262 SUPERFAMILY Ribokinase-like 14 237 IPR029056 -
Ssu4g1155 262 PRINTS Ribokinase signature 43 62 IPR002139 GO:0016301
Ssu4g1155 262 PRINTS Ribokinase signature 16 37 IPR002139 GO:0016301
Ssu4g1155 262 PRINTS Ribokinase signature 225 236 IPR002139 GO:0016301
Ssu4g1155 262 PANTHER PFKB-LIKE CARBOHYDRATE KINASE FAMILY PROTEIN 6 245 - -
Ssu4g1155 262 Pfam pfkB family carbohydrate kinase 16 242 IPR011611 -
Ssu4g1155 262 Gene3D - 13 251 IPR029056 -
Ssu4g1155 262 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 6 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1155 Ssu-Chr4 18437749 18441707 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1155 - - ccaj:109795876 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1155 4 18437749 18441707 Ssu4g1155 4 18437749 18441707 ECH
Ssu4g1155 4 18437749 18441707 Ssu7g2276 7 44739553 44747763 PCT