Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1146 ATGTACATGTGTAGTACTATGAGAATCATCGTGGTGCCggtcacagtggtggtgacagtgatgATAGTAGTTGTTCCAAAGAGAGTAGAGACAGCTCGGGCTTTCTTTGTGTTTGGGGACTCACTGGTTGACAGTGGCAACAACAATTACTTGCCAACCACGGCACGTGCTGACTCTCCCCCTTATGACATAGACTATCCCACTCATCGCCCCACTGGACGCTTCTCCAATGGCTTCAACCTCCCCGACCTTATCAGCCAGCGAATTGGGTCTAAACCCACATTGCCTTACTTGAGCCCAGAATTGAATGGACAAAGGCTTTTGGTTGGGGCCAACTTTGCTTCTGCTGGCATAGGAATCCTCAATGACGGCATCCAATTTGTTGGCATCATGAGAATTTTCCAGCAGTTTGCATTGTTTGAGCAGTACCAGGAACGGTTATGTGCGGTTGTAGGGGCTAAGTGGGCGAAGAAGGTTGTGAATGGAGGTCTGGTGCTAATGACACTGGGGGGTAATGACTTCGTTAATAACTATTTCTTGGCTCCTGTTACTCCGAGGTCTCGTCAATTCACCGTCCCCGACTTCTCTCGCTACCTTATCTCTGAGTACCGAAAAATTCTCAAGACGTTGTATGAGTTGGGGGCCCGACGGGTGCTGGTGACAGGAACTGGTCCATTGGGTTGTGTTCCCTCTCAGCTTGCTATGAGGAGCACAAACGGGGAGTGTGTACCTCAGTTACAACAAGCCATGCAGGTTTTCAACCCTATGCTGGTTAACATGACCAGAGAACTCAACTCCCAACTTGGTGCTAATGTTTTTGTAGCTGTCAATGCCTTCCTAATGAACATGAACTTCATCACCAACCCTCAAAAATATGGTTTTGTGACATCGAAGATAGCATGTTGTGGACAAGGACCATACAATGGGCCGGGCCCGTGTAACTCCTTGTCGAGCCTGTGCCCCAACCGGGATGCTTATGCATTTTGGGATGCTTTCCATCCGAGCCAACGTGCGCTGGAGTTCATTCTCGATGAAATCTTCAACGGAACCAGCGACCTTATGAGCCCCATGAACCTCAGCACCATCATGGCCCTGGACTCTAACATCTAA 1110 0.4784 MYMCSTMRIIVVPVTVVVTVMIVVVPKRVETARAFFVFGDSLVDSGNNNYLPTTARADSPPYDIDYPTHRPTGRFSNGFNLPDLISQRIGSKPTLPYLSPELNGQRLLVGANFASAGIGILNDGIQFVGIMRIFQQFALFEQYQERLCAVVGAKWAKKVVNGGLVLMTLGGNDFVNNYFLAPVTPRSRQFTVPDFSRYLISEYRKILKTLYELGARRVLVTGTGPLGCVPSQLAMRSTNGECVPQLQQAMQVFNPMLVNMTRELNSQLGANVFVAVNAFLMNMNFITNPQKYGFVTSKIACCGQGPYNGPGPCNSLSSLCPNRDAYAFWDAFHPSQRALEFILDEIFNGTSDLMSPMNLSTIMALDSNI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1146 369 Gene3D SGNH hydrolase 27 352 IPR036514 -
Ssu4g1146 369 Pfam GDSL-like Lipase/Acylhydrolase 36 345 IPR001087 GO:0016788
Ssu4g1146 369 CDD SGNH_plant_lipase_like 34 349 IPR035669 -
Ssu4g1146 369 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 5 366 - -
Ssu4g1146 369 SUPERFAMILY SGNH hydrolase 35 350 - -
Ssu4g1146 369 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 5 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1146 Ssu-Chr4 18230671 18234973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1146 34 363 Acyl Lipid Metabolism Gene Families AT4G10950 33.934 8.37e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1146 - - aprc:113860789 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1146 4 18230671 18234973 Ssu7g2293 7 44968103 44973432 PCT