Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1090 ATGAATGTGGTGGTCAAAGTTGGAAGCTTGATAACCCAAGGTGTCTATTCTGTTGCTACCCCTTTTCATCCCTTTGGTGGGGCAGTTGATGTCATTGTTGTTCAGCAGCAAGATGGCACATTCCGGTGCACGCCATGGTATGTTCGCTTTGGTAAGTTTCAAGGTGTTCTGAAAGGTGCTGAGAAGATTGTTCGAATAAATGTCAATGGGGTTGAAGCAAACTTCCACATGTATCTTGACAATTCAGGGGAGGCTTATTTTGTAAAAGAGgtggatgatgatgatggtgataaAGGAATCAAGTCAAATGGGGCTGCTGAAGCTGTGGATAACTTGGAATTTAGTCAAGAAGATGGTGgtgtcaaaattgataaaagaaaTGATAGTTATCTGAGTATGGATGATACACTTGGTTATAGACTTGACCATAGCATATCTGATTCAGGGGTGCTGCACCGTTCCTCAGTTTTGCCACAACCTCAAAGGGCAGAAACCGATGTTGATAGGAGGTTTGGTGAATTCCAAGATGATCAATCCTCTTTTGAAGGTTCACTTGAGGTTTCAGAATATGAGTCTAGTCGATATGAGAATCTAGATGTGGAGAATTTTGTGGACTCACAAGGTTCCCAGCCGGAGGTGGTCTTGGTCAGTGTTGATGGTCATGTATTGACGGCCACTATTTCAGAATCAGAGCAGAATGAGGAGAATGTGCTGTTAAAAACTCCTCAATTCCATCTGGGCCCAGGTGAAGGGACTGACTTCTATGAAGGCAATGGGGAATTTAGTTCTGATGAAAATGCTTGGGCTGCTGATTATGTTAGTCAGCTGGATGCTTCGACAGCTGATGTTCCTGCTAGTAGTTATAACACTAAGGTTGGTGATGGTAATTCTGGGCTCCTGGTAAATATTTGTCACACTGAGGAAACCTTGGTGATTAAAAATCAAGAAGATCATCATTTGCAGACTGATTCGGAAGAGGTTGTAACTTGTATGAAGAGAGAGAGTGTCTTCAAAAGTTGTTTGGAATTACATGAGTTTGCCCAGCAGGCTGGAAATGCTGACTTACAAGATGTAGGTTCCTCATTGGAGGTTCAAAATTCAGCAGAGGAATCCAATGCAAATTGttcaattattgatgaaaatgagcAAGAAAACATCAAACAATCTAGAAACATTGACAAATTATCTTCCCTTAGTGGGCCTACTTCCTTGGATGACCATAGTTCTCTAGAATTAGAAGTAGAACTTCATGAGGTTGATAAAGATGCATCAGTGGAAGTTGACACTGGTTCTGGCAGTCATTTTGGTACTAAGGATATTGAATGTAATGATGAACATGTTGGAAAGTCGGTATCAAATGATCAGGTAGATGATAGTCAACAAACACCTGCACTTGAAGATGCTTGTAAGAAAAGTGAAACTTCCAATGTGGAGGACCAAATTCATTCTGCTTTGAGATTTGAGGCCTCACTTTGTGGTCATGAACTTAAGGCAGGTATGGGTTTGGTTGCTGCTGCTGAGGTTTTTGAAGCACATCGAATATCTGCAGAGGAATTTAGAAGTTCTGCACCGTCCATAATTAAGAATGAAAATCTTGTTCTGAAGTTCAGAGAGAGATATCTGCTGTGGGAAAAGGCCGCTCCTCTTGTTCTTGGAATGACTGTATTTGGTTTAGACTTACCTGTTGAGCCCAAAGATACAATTCCTGTGGGACAAGATGATGCAGTAAAAGCCACGGACAGTGATCCTGGACCAGCTTCATCTCGTCGCAGATGGAGACTTAGACTTTGGCCTATTCCTTTTCGAAAAGTCAAGACAATTGAGCATACTAATAGTAATGCATCAAGTGAGGATGTATTTGTAGATTCTGAGTCTGATTGGCAAACTTCTGTTGTCGAGCCATCTCCAACATCTGCTAGGCATGAGTCTCCTCGCAAGCAATTTGTGAGGACAAATGTTCCCTCTAATGAGATGATAGCGTCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACACAACAGGTTAATGCTCATATATACTTATGGAAGTGGAAtgcaaaaatagtaatttcagaTGTGGATGGAACTATTACCAAATCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAGTCTGGAGTGGCAAGGCTTTTCTCAGCTATTGAAGAAAATGGATACCAGCTACTTTTTTTGAGTGCCCGTGCTATTGTCCAAGCTTATCTAACCAGGAACTTTTTGCTTAACCTGAAACAGGATGGCAAGACCTTACCGAATGGACCTGTTGTTATTTCACCTGATGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGAGCACCTCATGAGTTCAAGATTGCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCCTTCTATGCGGGGTTTGGCAATAGAGACACAGATGAACTTAGTTACAGGAAGATAGGAATTCCAAAgggcaaaatatttattattaatcctAAGGTTTGCATCCTGGATTGA 2562 0.3977 MNVVVKVGSLITQGVYSVATPFHPFGGAVDVIVVQQQDGTFRCTPWYVRFGKFQGVLKGAEKIVRINVNGVEANFHMYLDNSGEAYFVKEVDDDDGDKGIKSNGAAEAVDNLEFSQEDGGVKIDKRNDSYLSMDDTLGYRLDHSISDSGVLHRSSVLPQPQRAETDVDRRFGEFQDDQSSFEGSLEVSEYESSRYENLDVENFVDSQGSQPEVVLVSVDGHVLTATISESEQNEENVLLKTPQFHLGPGEGTDFYEGNGEFSSDENAWAADYVSQLDASTADVPASSYNTKVGDGNSGLLVNICHTEETLVIKNQEDHHLQTDSEEVVTCMKRESVFKSCLELHEFAQQAGNADLQDVGSSLEVQNSAEESNANCSIIDENEQENIKQSRNIDKLSSLSGPTSLDDHSSLELEVELHEVDKDASVEVDTGSGSHFGTKDIECNDEHVGKSVSNDQVDDSQQTPALEDACKKSETSNVEDQIHSALRFEASLCGHELKAGMGLVAAAEVFEAHRISAEEFRSSAPSIIKNENLVLKFRERYLLWEKAAPLVLGMTVFGLDLPVEPKDTIPVGQDDAVKATDSDPGPASSRRRWRLRLWPIPFRKVKTIEHTNSNASSEDVFVDSESDWQTSVVEPSPTSARHESPRKQFVRTNVPSNEMIASLNLKDGQNLVTFSFSSRVLGTQQVNAHIYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVARLFSAIEENGYQLLFLSARAIVQAYLTRNFLLNLKQDGKTLPNGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKVCILD 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1090 853 Pfam lipin, N-terminal conserved region 1 96 IPR007651 -
Ssu4g1090 853 PANTHER LIPIN 1 849 IPR026058 -
Ssu4g1090 853 SMART lns2 698 852 IPR031315 -
Ssu4g1090 853 MobiDBLite consensus disorder prediction 568 588 - -
Ssu4g1090 853 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 488 568 IPR031703 -
Ssu4g1090 853 PANTHER PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 849 - -
Ssu4g1090 853 SUPERFAMILY HAD-like 690 840 IPR036412 -
Ssu4g1090 853 Pfam LNS2 (Lipin/Ned1/Smp2) 653 849 IPR013209 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1090 Ssu-Chr4 17322444 17328437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1090 K15728 - gmx:100780784 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1090 4 17322444 17328437 Ssu7g2333 7 45868276 45875874 PCT