Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1005 ATGGTTTTATATGAGCATTCAGATGTTTTTCAGTGGGGTCTTAATCTTCTTGAAGGTGACCCTGCTTATAGTCCTGGATACTATGACAACATAATTCAACATGATGCTGGTGACATCTATAATGGACAGTACTTCCATAGCCATTATGATAATGAATGTAACCATGTAGAGAATGATGAGATCATTGCCCGTACACTTCAAGAAGAGTTTTCACAGCTAGAGATTGCTGAATCTTCAGGATATTTACAGGCAGGTGAAGAACAGTTCCATGTTTCTGAGACTCAGCCTGCATATGATTGGCATAACTCTTCAATGGTGAACTATTGTTCAGGAGGTCATGATTATGCCCAAGAAGGAGTTGGTGATGAAGAACCCTCTAGTTCATGTTCTAGTCCTTGTGAAACACAGGAATATTCGTTAGAGCTAACTGACAATTATGCACTTGATGATGAAGTAGGGAGGAGATTGAGTCAAATGATACCAATTCCTCATGTTCCAAAAATTAATGGTGAAATTCCTTCGATTGATGAAGCAACTTCTGATCATCAAAGGCTTCTGGATAGATTACAGTTATATGACTTTGTGGAGCACAAAGTACAAGGGGATGGTAATTGTCAGTTCCGGGCACTATCTGATCAACTGTATAACGCACCTGATCATCACAACTTTGTAAGGCGACAAGTTGTCAATCAGCTCAAATCTAATCCAGAGATTTATGATGGATATGTTCCCATGGAATATGATGACTATTTGGACAAGATGTCTAAGAGTGGAGAATGGGGTGATCATGTCACTCTCCAAGCAGCTGCAGATTCGtTTGGTGTGAGAATATTTGTGATGACTTCTTTCAAGGACACCTGTTGCATAGAGATACTTCCTCATTTTGAGAAGCCAAAAGGAGTGATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAACTCCATTTATCCCCAAGGaggtatttttcaaattttgcatTTCAGAAACAACCTTTCAAATGATTTCAATCACTAG 1014 0.3876 MVLYEHSDVFQWGLNLLEGDPAYSPGYYDNIIQHDAGDIYNGQYFHSHYDNECNHVENDEIIARTLQEEFSQLEIAESSGYLQAGEEQFHVSETQPAYDWHNSSMVNYCSGGHDYAQEGVGDEEPSSSCSSPCETQEYSLELTDNYALDDEVGRRLSQMIPIPHVPKINGEIPSIDEATSDHQRLLDRLQLYDFVEHKVQGDGNCQFRALSDQLYNAPDHHNFVRRQVVNQLKSNPEIYDGYVPMEYDDYLDKMSKSGEWGDHVTLQAAADSFGVRIFVMTSFKDTCCIEILPHFEKPKGVIFLSFWAEVHYNSIYPQGGIFQILHFRNNLSNDFNH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1005 337 ProSiteProfiles OTU domain profile. 194 318 IPR003323 -
Ssu4g1005 337 PANTHER OTU DOMAIN CONTAINING PROTEIN 25 322 - -
Ssu4g1005 337 SUPERFAMILY Cysteine proteinases 180 318 IPR038765 -
Ssu4g1005 337 PANTHER CYSTEINE PROTEINASE SUPERFAMILY PROTEIN 25 322 - -
Ssu4g1005 337 Pfam OTU-like cysteine protease 200 286 IPR003323 -
Ssu4g1005 337 Gene3D - 175 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1005 Ssu-Chr4 16086312 16090190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1005 - - aip:107648617 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1005 4 16086312 16090190 Ssu7g2452 7 47694780 47698434 PCT