Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0984 ATGGGGATACTACAGGACGACGTGGTGATTATCAGAGAGGCAGAGAAAGAAGGTGAAACGACGGTCATAACCGTGAATTGCCCCGACAAGACCGGTCTAGGTTGTGATTTGTGTCGCATCATTCTCTTCTTTGGTCTTAGCATTGTCCGAGGAGATGTGTCCACCGACGGAAAATGGTGCTACTTAGTTTTCTGGGTGGTGGGGAAGCAAAGGACGAGGTGGAGTTTGTTGAAGAAGAGGCTAATTGGGGCGTGCCCTTCTTGTTCCTCAGCTTCTGGAATTTCTTATTACCGTTCAGACTTGCAGCCTCCTAAACCCCCCGATGTCTaccttttgaaattttgttgcCGTGATCGTAAAGGCCTTTTACATGATGTTACAGAGGTTCTTTGCGAGCTAGAGCTCACCATAAACAAAGTGAAGGTATCTACTACACCTGATGGCAAAGTGGTGGATCTGTTTTTCATCACGGATACCAGGGAACTACTGCAtacaaagaagagaaaggaTGACACAATTGAACAGTTAACAGCTATTTTGGGGGATCCCTTAATTACCATAGACATTGAATTGGTTGGCCCTGAAATTGCTGCTTGTTCTCAAGCATCTTCATTCCTTCCAAGTGCCATCACTGAAGATATCTTTGATTTGGAATTACCTGATTCATTACGAAGTGGGGCTTTCACATCGGATTCTGTTTCTATTGTGATGGACAATTTGCTGAGTCCTGCTCACACGCTTGTCCAAATTATATGCCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGCGATTCACTACAAAACCTAGAGGAAAATGTGAGATTGACTTGTTCATCATGCAAGCAGATGGGAAAAAGATAGTTGACCCCAGCAAGCAGAAGTCTTTGTCGTCACGCCTTAGGATGGAACTACTTCGTCCGCTCAGAGTAACTGTTGTAAGCAGGGGTCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTGTCTGGCAAAGGACGACCCCTTGTTTTTCATGATATTACTCTTGCTCTCAAAATGCTTGGCCCTCGCATCTTTTCGGCTGAAGTTGGAAGACATGTGATTGGAGATCGCGAGTGGGAAGTTTACAGAATCTTGCTTGATGAAGGGGAGGGTTTGACTGTTCCATGGAACAAGATTGAGAAAGGAGTTTGGAAGATGTTGATGGGTTGGGAGTGA 1239 0.4366 MGILQDDVVIIREAEKEGETTVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYLVFWVVGKQRTRWSLLKKRLIGACPSCSSASGISYYRSDLQPPKPPDVYLLKFCCRDRKGLLHDVTEVLCELELTINKVKVSTTPDGKVVDLFFITDTRELLHTKKRKDDTIEQLTAILGDPLITIDIELVGPEIAACSQASSFLPSAITEDIFDLELPDSLRSGAFTSDSVSIVMDNLLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGKCEIDLFIMQADGKKIVDPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLGPRIFSAEVGRHVIGDREWEVYRILLDEGEGLTVPWNKIEKGVWKMLMGWE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0984 412 SUPERFAMILY ACT-like 107 179 IPR045865 -
Ssu4g0984 412 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 412 IPR040217 -
Ssu4g0984 412 Pfam ACT domain 110 167 IPR002912 -
Ssu4g0984 412 SUPERFAMILY ACT-like 244 296 IPR045865 -
Ssu4g0984 412 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 2 412 - -
Ssu4g0984 412 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
Ssu4g0984 412 SUPERFAMILY ACT-like 18 81 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0984 Ssu-Chr4 15684540 15687000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0984 - - gmx:100818216 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0984 4 15684540 15687000 Ssu4g0984 4 15684540 15687000 ECH
Ssu4g0984 4 15684540 15687000 Ssu7g2462 7 48021322 48023784 PCT