Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0960 ATGGTCTTCCAAACAAACAATCCTCACTTCGTCTTGTTTCCCCTAATGGCTCAAGGCCACATCATCCCCATGATGGATATTGCAAGACTATTGGCGCAGCGTGGGGTGATTGTTACCATATTCACCACCCCAAAAAATGCATCACGTTTCAATTCAGTTCTTTCTCGTGCTGTTTCATCCGGCCTCCAAATCCGGCTAGCACAACTCCATTTTCCATCAAAAGAAGCAGGACTACCTGAAGGGTGTGAGAATTTTGACATGGTGACGTCAAATGATAGGCACAAAATCTTCCGCGCCATCAACATGCTCCAAAAGCCAGCAGAGGAATTGTTTGAGGAACTGAGACCCAAACCAAGTTGCATAATCTCTGACTTTTGCATTGCCTGGACTGCTCAAGTAGCTGAAAAGTATCACATTCCGAGGATTTCATTCCACGGATTTTCTTGCTTCTGCCTCCATTGCCTGTACCAGATACGCATTTCAAAGGTTTGTGAAAGCATCACTTCAGAATCTGAGTACTTCACTGTCCCTGGCATACCTGACCAAATTCAAGTTACCAAAGAGCAGACACCTCTAATGACCTCAAATTCAGATGAAATGGATGATTTTCTGGAGCAGGTGCGCGATGCTGAAATGAAGTCATATGGggtaataataaatacttttgaagagTTGGAGAAGGCATATGTGAGGGATTACAAGAAGGTGAGAAATGAAAAGGTGTGGTGCATTGGTCCTGTTTCATTATGTAACAAAGATGGCTTGGATAAGGCTCAAAGAGGCAACCAGGCCTCAATTAATGAGCACCATTGTTTGAAGTGGCTAGATTTGCAGCAACCCAAGTCTGTGGTCTATGTTTGTTTTGGAAGTTTGTGCAACTTGATTTCTTCTCAACTTGTGGAGCTAGCCTTGGCCTTGGAAGATACCAAAAGACCATTTGTATGGGTTATTAGGGAGGGAAGCAAGTTCCAAGAGTTGGAAAAGTGGATCAGTGAAGAAGGGTTTGAGGAAAGGACCAAAGGGAGAGGCCTTATAATTCGAGGTTGGGCTCCACAAGTACTAATATTATCACACCCTGCCATTGGAGGATTCTTAACACACTGTGGTTGGAATTCAACACTTGAAGGGATAAGTGCTGGAGTGCCAATGGTTACCTGGCCTCTATTTGCTGatcaatttttaaatgagaAGCTCGTTACTCAAGTGTTGAAGATTGGTACGAGCGTTGGGGTAGAGGTTCCGATGAAGTggggagaggaagagaaaacAGGTGTGTTGGTGAAGAAGGAAGATATTAAGAGGGCAATATGCATGGTGATGGATGATGGAGAAGAAAgtaaagagagaagagaaagggcAAGTAAACTCAGTGAGATGGCAAAGAGAGCGGTTGAAAATGGAGGGTCTTCTCATCTTCATATGACTTTGCTTATCCATGACATTATGCAACAATCAAGTAGCAAGGAGGATATAAAGTTGAGTCCTGAAGAGTCGCAATTTACATGTagcatttga 1515 0.4112 MVFQTNNPHFVLFPLMAQGHIIPMMDIARLLAQRGVIVTIFTTPKNASRFNSVLSRAVSSGLQIRLAQLHFPSKEAGLPEGCENFDMVTSNDRHKIFRAINMLQKPAEELFEELRPKPSCIISDFCIAWTAQVAEKYHIPRISFHGFSCFCLHCLYQIRISKVCESITSESEYFTVPGIPDQIQVTKEQTPLMTSNSDEMDDFLEQVRDAEMKSYGVIINTFEELEKAYVRDYKKVRNEKVWCIGPVSLCNKDGLDKAQRGNQASINEHHCLKWLDLQQPKSVVYVCFGSLCNLISSQLVELALALEDTKRPFVWVIREGSKFQELEKWISEEGFEERTKGRGLIIRGWAPQVLILSHPAIGGFLTHCGWNSTLEGISAGVPMVTWPLFADQFLNEKLVTQVLKIGTSVGVEVPMKWGEEEKTGVLVKKEDIKRAICMVMDDGEESKERRERASKLSEMAKRAVENGGSSHLHMTLLIHDIMQQSSSKEDIKLSPEESQFTCSI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0960 504 CDD GT1_Gtf-like 8 460 IPR002213 GO:0008194
Ssu4g0960 504 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 280 402 IPR002213 GO:0008194
Ssu4g0960 504 Gene3D Glycogen Phosphorylase B; 2 272 - -
Ssu4g0960 504 PANTHER GLYCOSYLTRANSFERASE 4 493 - -
Ssu4g0960 504 PANTHER GLYCOSYLTRANSFERASE 4 493 - -
Ssu4g0960 504 ProSitePatterns UDP-glycosyltransferases signature. 349 392 IPR035595 -
Ssu4g0960 504 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 483 - -
Ssu4g0960 504 Gene3D Glycogen Phosphorylase B; 273 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0960 Ssu-Chr4 15257219 15258733 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0960 9 488 Glycosyltransferase AT2G36760 57.676 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0960 K13496 K22771 gmx:100802029 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0960 4 15257219 15258733 Ssu7g2488 7 48771338 48775476 PCT