Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0943 ATGTGTCCGGCAATGGCACTAAATGAGCAGAGGAGCAAAGATGATATACCAGAAAGTCAATTTCAGAAAGGAGTGAAGCAGCTGTGCGAGAAAGGTCATCTTCACGCGGTACCTAAGAAGTACATACTCCCTGTTTCCGACAGACCCACCAAGAGTGTGGAAGATCCAAATGTTGCCAAGCAAAACCTTCAACTACCCATCATTGATTTTGCCGAATTGCTTGGTCCAAATAGGCCCCAAGTCCTTCAATCCCTAGCCAATGCTTGTGAACAGTATGGATTTTTCCAGCTGGTAAATCATTGCATCTCGGATGATGTTGTGAGGAGCATGATAGATGTGAGTGGGAGGTTCTTCGATCTCCCTTTCGAGGAGAGAGCTAAGTACATGACAACCGATATGAGAGCACCGGTTCGATGTGGGACCAGCTTCAGCCAAACCAAAGACAGTGTGTTGTGTTGGAGGGATTTCTTGAAACTCCTGTGTCATCCCTTACTAGATTTCCTCCCCCATTGGCCTGCTTCCCCAGTGGACTTTCGGAAAGTGGTGGCCACCTATGCAGAAGAAACCAAACATTTGTTCCAGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATTATGGAAACCAACCAAGAAGTAGAggacaatattttgaaagacttGCAAAATGGGAGCCAGATGATGGTGGCCAATTTCTACCCACCATGCCCTCAACCAGACCTTACCCTGGGTATGCCCCCTCACTCCGACTATGGCTTCCTCACTCTTCTCCTACAAGACGAGGTAGAAGGCTTGCAAATCCAATACCAAGACAAATGGGTCACCGTTCAACCCATTCCCAACGCCTTCGTTGTCAATATTGGTGATCACTTAgagATATATAGCAATGGAAAATACAAGAGCGTATTGCATAGAGTTCTGGTGAATGAAGTTAAGAGTAGGGTATCGGTGGCTTCGCTGCATAGCCTTCCCTTCAACTGTACGGTGAGACCGTCGCCAAAACTCGTTGACGAAGCGAATCCCAAGCGTTACATGGACACAGATTTTGGGACCTTTCTTGCGTACGTATCCACCGGAGAGCCCAATAAAAAGGATTTCCTGGAGTCTAGAAAGTTGCATTATTGA 1125 0.4596 MCPAMALNEQRSKDDIPESQFQKGVKQLCEKGHLHAVPKKYILPVSDRPTKSVEDPNVAKQNLQLPIIDFAELLGPNRPQVLQSLANACEQYGFFQLVNHCISDDVVRSMIDVSGRFFDLPFEERAKYMTTDMRAPVRCGTSFSQTKDSVLCWRDFLKLLCHPLLDFLPHWPASPVDFRKVVATYAEETKHLFQVVMEAILESLGIMETNQEVEDNILKDLQNGSQMMVANFYPPCPQPDLTLGMPPHSDYGFLTLLLQDEVEGLQIQYQDKWVTVQPIPNAFVVNIGDHLEIYSNGKYKSVLHRVLVNEVKSRVSVASLHSLPFNCTVRPSPKLVDEANPKRYMDTDFGTFLAYVSTGEPNKKDFLESRKLHY 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0943 374 Pfam 2OG-Fe(II) oxygenase superfamily 226 321 IPR044861 -
Ssu4g0943 374 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 323 IPR005123 -
Ssu4g0943 374 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 15 372 - -
Ssu4g0943 374 SUPERFAMILY Clavaminate synthase-like 27 356 - -
Ssu4g0943 374 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 15 372 - -
Ssu4g0943 374 Pfam non-haem dioxygenase in morphine synthesis N-terminal 65 163 IPR026992 -
Ssu4g0943 374 PRINTS Isopenicillin N synthase signature 248 269 - -
Ssu4g0943 374 PRINTS Isopenicillin N synthase signature 85 102 - -
Ssu4g0943 374 PRINTS Isopenicillin N synthase signature 283 309 - -
Ssu4g0943 374 Gene3D - 17 355 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0943 Ssu-Chr4 15029690 15032812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0943 22 347 Glycosyltransferase AT5G59530 35.417 1.09e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0943 - - gmx:100778488 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0943 4 15029690 15032812 Ssu4g0943 4 15029690 15032812 ECH
Ssu4g0943 4 15029690 15032812 Ssu7g2495 7 48910193 48913186 PCT