Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0915 ATGGATCGCCTTTCTTCCACTACCATTATCCCGGAAGCGTTTCAAGGGGCCAAAGATGACCTCACCACGCAACTTTCATTGGTTTGGAGTCAAATCAGAGCGCCATTGATTGTCCCGTTGCTGAGACTAGCAGTGTTTCTGTGCTTGATCATGTCGGTGATGATGTTCATGGAGAGGGTTTACATGGGCATTGTCATCACTCTGGtgaagttgtttggtagaaagcCCGAGAAACGTTACAAATGGGAGCCAGTGAAGGACGACATAGAGTTGGGGAACTCTTCTTACCCAATGGTCCTTGTTCAAGTTCCCATGTACAACGAAAGAGAGGTCTATCAGCTGTCTATTGGAGCCGCGTGTGGGCTTTCTTGGCCTTCAGATAGGATCATCATACAAGTCCTCGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTAAGGGACAATAGGAACGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGAAGCTACGTGAAACAATGCGATTGCGTTGCCATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGCACCGTTCCTTTCCTCGTGCACAATCCTGAACTCGCCCTCATTCAAGCTCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCGCTGAATGAGGCTGGTGGGTGGAAAGATAGGACCACAGTGGAAGATATGGACCTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTGTGACTTGAAGGTCAAAAATGAACTGCCGAGTACTCTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGGCCAGCCAATCTTTTTAGGAAAATGGTCATGGAGATCATAAACAACAAGAAAGTGACATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCGTTGTATTACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTCTTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTACATCGAACGAAGGCAACGATTATCGGTCTGCTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGACTAAAGCAGGAGCTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGCGACAGGATTCACTTGTTAGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCacttcttcatcttcctcttTATCCAATCTCTTGCCTTCTTCGTCATGGCATTTGGATATGTAGGCACCATTGTTCCCAACTCCTAG 1602 0.4544 MDRLSSTTIIPEAFQGAKDDLTTQLSLVWSQIRAPLIVPLLRLAVFLCLIMSVMMFMERVYMGIVITLVKLFGRKPEKRYKWEPVKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLCDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIINNKKVTLWKKIHVIYSFFFVRKVVAHINTFVFYCVVLPATVLVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKTKAGAKAPKKPRFRIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFVMAFGYVGTIVPNS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0915 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 312 IPR029044 -
Ssu4g0915 533 PANTHER - 1 532 - -
Ssu4g0915 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 372 IPR029044 -
Ssu4g0915 533 PANTHER BNAC09G36340D PROTEIN 1 532 - -
Ssu4g0915 533 Pfam Glycosyltransferase like family 2 98 332 - -
Ssu4g0915 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0915 Ssu-Chr4 14565789 14570161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0915 1 532 Miscellaneous Gene Families AT5G03760 81.051 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0915 K13680 - gmx:100782772 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0915 4 14565789 14570161 Ssu4g0915 4 14565789 14570161 ECH
Ssu4g0915 4 14565789 14570161 Ssu7g2526 7 49567564 49573258 PCT