Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0799 ATGTCGGTGAAGGAGTGTCACCACCACGGGGGAAAGAAGCACAAAATCCTCCGTCGCATCTTGTGGGGCACAGTGATCTTCGCGTTCATCGTGTTGGTGACAGTTCTGATAATCTGGGCAATCCTAAAGCCTTCGAAGCCATCCTTCATCATCCAAGACGTCACCGTATACGACTTCAACGCCACCATCCCCAACTTCCTCACCTCGAGCTTTCAGGTCACGCTCTCCTCGCGCAACCCCAACGATAAAATCGGCATCTACTATGACCGTCTCGACACCTACGTAACTTACCAGAACCAGCAGGTGACGTACCACACCTCAATCCCTCCCTCGTACCAAGGTCACAAGGAAGAAGACGTGTGGTCCCCATTAGTTTACGGCACCAACGTCCCCGTCGCTCCCTACAACTTCGTTGGCCTCTGTCAAGACCAGTCTAACGGCAACGTCCTCGCCATCGTTAAGATTGACGGTAAGGTACGATGGAAGGTCGGTGCCTTCATCTCTGGCCACTACAACCTCCATGTAAGCTGCCCTGCTTTCATAACCTTTGGCCCCCGGAGCACCGGGATTGCCCTTGGCAATAACGCCGTTAAGTATCAATTGGTCCAGCGTTGCTCCGTCGGGGTTTGA 630 0.5349 MSVKECHHHGGKKHKILRRILWGTVIFAFIVLVTVLIIWAILKPSKPSFIIQDVTVYDFNATIPNFLTSSFQVTLSSRNPNDKIGIYYDRLDTYVTYQNQQVTYHTSIPPSYQGHKEEDVWSPLVYGTNVPVAPYNFVGLCQDQSNGNVLAIVKIDGKVRWKVGAFISGHYNLHVSCPAFITFGPRSTGIALGNNAVKYQLVQRCSVGV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0799 209 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Ssu4g0799 209 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 209 - -
Ssu4g0799 209 PANTHER OS05G0367900 PROTEIN 4 209 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0799 Ssu-Chr4 12433707 12434336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0799 18 177 EF-hand Containing Proteins AT5G21130 21.951 7.14e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0799 - - gmx:100795832 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0799 4 12433707 12434336 Ssu4g0799 4 12433707 12434336 ECH
Ssu4g0799 4 12433707 12434336 Ssu7g2637 7 52443432 52445766 PCT