Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0791 ATGGATATTGAGTCAATAACGCAAGTAAACAAGGGTGGATTTTTTTCTCACTGGGGGAACTGCCTCAGGGCTTTGCCTAGGAGCTCCAAGTCCAAGGTTATCAACTTCACAAGGAGCATAAAAAAGATTGGAAAAGATGACCCCAGACGAGTAATTCACTCATTAAAAGTGGCAATTGCTCTCACATTGGTGTCCTTGTTTTACTACTCGAGGCCTCTTTATGATGGCTTCGGAGTTGCCGGAATGTGGGCTGTTCTGACAGTGGTGGTAGTATTTGAATTCAGCGTAGGCGCAACCCTCAGCAAAGGTTTAAATAGAGGATGTGCTACATTATTAGCTGGTGCTTTAGGGGTTGGAGGGCAACACTTAGCTACTGCATTTGGAGAAAGGGCAGAACCTATTGTCCTTGGGATCCTAGTCTTCATTCTAGCCGCAGGGTCTacttttttcagattttttccAAAGATCAAGGCAAGATATGACTATGGGGTGGTGATATTTATATTGACATTCTGTTTGGTAACCGTCTCGGGGTACAGAGTGGAGGAACTCTTCGAGCTCGCCCATCAGAGACTTTCAACAATTTTAATAGGAGCAGCAGCTTGCATGGTCATCTCCATTTTCATTTGTCCAGTATGGGCAGGTGAAGACCTTCACAAGTTGGTGGCTTCCAATATAGAACAGTTAGCAAATTATCTGGAAGGATTCGAAGTCAAATATTTTCACTGCTCAGAGGATAAGGGAAAATGTGAGAAATCGATTCTTGAAGGATATAAAAGTGTTCTCAATTCTAAAGCAAGTGAGGAGTCCTTgGCAAATTTGGCAAGGTGGGAACCAGGACATGGCCGTTTTCGTCTTCGTCATCCTTGGAAGCAGTACTTGAGGATTGGAGCACTTACTCGGGAATGTGCTTACAAGATTGAAACCCTTAACAACTACCTTAACCCGGAAATCCAAGCATCTTTGGAATTCAAGTGTAAAGTTCAAGAACCATGCACAAGGATGTGTTCAGAGTCCAACAAGGCGTTAAAGGCAATATCTTCATCAATCAAAACAATGACAGACCCATCAGCTGCCAAAATCCACATAGAAAATTCAGAAAATGCTGTTGAAGACCTCAAAGTTGCCCTTGAAATCGTTTCGTTGGAAGATACTGAACTCGTAGCCATAATCCCAGTTGCTACAGTTACATCAATACTCGAAGAAATCACCAAGTCAGTGGAGAAAATATATGAATCTGTTTCCGAGCTTTCTCATTTAGCCCATTTCGAGAGTGTCGTAGAACCCAACGTCTCACCAGAGAAGCCACCCCTTCTTCATCGCGGTATCATAAAACCTGTTGTGGATATCGATAACACCGTCGACCATGTTGAAATTACGATCCAAGAGATAACTACAGACTctccagaaaaagaaaaagcatcaACAAAACCCTCCGAACATTTGTAA 1449 0.4168 MDIESITQVNKGGFFSHWGNCLRALPRSSKSKVINFTRSIKKIGKDDPRRVIHSLKVAIALTLVSLFYYSRPLYDGFGVAGMWAVLTVVVVFEFSVGATLSKGLNRGCATLLAGALGVGGQHLATAFGERAEPIVLGILVFILAAGSTFFRFFPKIKARYDYGVVIFILTFCLVTVSGYRVEELFELAHQRLSTILIGAAACMVISIFICPVWAGEDLHKLVASNIEQLANYLEGFEVKYFHCSEDKGKCEKSILEGYKSVLNSKASEESLANLARWEPGHGRFRLRHPWKQYLRIGALTRECAYKIETLNNYLNPEIQASLEFKCKVQEPCTRMCSESNKALKAISSSIKTMTDPSAAKIHIENSENAVEDLKVALEIVSLEDTELVAIIPVATVTSILEEITKSVEKIYESVSELSHLAHFESVVEPNVSPEKPPLLHRGIIKPVVDIDNTVDHVEITIQEITTDSPEKEKASTKPSEHL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0791 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 443 - -
Ssu4g0791 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 8 1 443 - -
Ssu4g0791 482 Coils Coil 363 383 - -
Ssu4g0791 482 Pfam Aluminium activated malate transporter 42 418 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0791 Ssu-Chr4 12273081 12275448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0791 1 463 Miscellaneous Gene Families AT3G11680 56.568 2.62e-177 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0791 - - gmx:100170704 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0791 4 12273081 12275448 Ssu4g0791 4 12273081 12275448 ECH
Ssu4g0791 4 12273081 12275448 Ssu7g2097 7 41375326 41379945 PCT