Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0744 ATGATGCCAAAACCCATGAACGTTTTGACAACGAAGCCCTCACCTTTGAGCACCATGGTGGTGGTGCTGATAATTTGCATTCTGGGTTTCTACGCCTTCCATTTCCCTCACCCTTCCGCACCTTCCTCCGCTTCCCTAAACCTCTCTCACTTGGAAACCCTCTTCCTTTCGACTTCCTCCAACTCCAGCATCTCCTCCTACCTCCGCGCCCTCACGCTGCACCCTCACCTCGCGGGAACAAAGCCCGCTTCGGACACCACCTCCTACGTCCTCAACCACTTCGCTTCGCTGGGCCTCCAGGCCCACACCGCGACCTACACCACGCTCCTCTCGTTCCCCGTGCGCTCCTCCCTCGCGGCGCATTTCGGCGACGGCTCCTCGGCGAGCCTGGGGGTCACCGAGGCGGCGGCCGGGGAGGGCGTGGTGGCGGCGTACCACGCGTACTCGCCGTCGGGGTCGGTCCACGCTCGGGCGGTGTTCGCGAACCACGGGAGGGAGAGGGACTACCGCGCGCTGGCGGCGATGGGGGTGAACGTGAGCGGGTGCGTCGTGGTGGTGAGGAAGGGCGGGGGGATGGGGCGGGGCGCGGTGGTGGAGAGGGCGGAGGCCAACGGGGCGGCGGCTGTGCTGGTTTACGGCGAGGGTGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGGCACGTGATGAGGGGGGGTATAGGGGACCCACTTACGCCTGGGTGGGCTGGGGTCGAGGGTGGTGAGACACTCGGGTTCGAACATAGTGAGGTTTTGAAAAGATTTCCCAAAATTCCGTCTATGCCCTTGTCAGCTGAGGTGGCTGACACTATTTTGTCCTCGCTTGGGGGTCTTCCTGTGCCCCTTGAGTGGAGGAGCACCCTGCGGTCTAAGGTCAGGCATGTTGGCCCTGGCCCCACCATGCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCTGTCATAAAGGGATCGGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATCGAGATGCATGGACGTACGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCTCTACTCGACATTGCTCGCCGGTTATCTGTTCTATTGGGCTTGGGGTGGAAGCCAAGGAGGACAATCGTTCTCTGCAGTTGGGACGCGGAGGAATTTGGGATGATAGGATCTACTGAATGGGTTGAACAAAACCTTATTAATCTGGGTTCCAAAGCTGTAGCATACCTTAATGTGGACTGCGCTGTGCAAGGCCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCacaaaaaagGTCAAGGATCCTGACTCTGAGGGTGTATCATTATATGAGAATTGGGCTGCTGCTGGTGGAGGCAATAATATTCAGAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAACACGCAGGGGTTCCATCTATTGATATGTATTATGGAAGAGATTTTCCTGTCTATCACACTGCTTTCGACTCCTATAACTGGATGGCAGAGTACGGAGATCCATTCTTCCACCGCCATGTTGCTGTTACTGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATTCCATTCTTCCTTTCAATTACATTTCATATGCAAATGAGTTACAGTCGTACAAAAACATGTTGAGCAACTTGATAGACCAGCAAATTTCTCTTCATCCGTTAACTACTTCAATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTGATGATGaattaaagAAACTGGGATTGCTAGAAACAAAAGGTTGTTTTGTTGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCTGAAAAAGGCTTCTTGGATGCAGATGGACTTCAAGGAAGGCAGTGGTTCAAGCATCTTGTGTTTGGGCCTTCCAGCGACCATGAAAGGCTGAATTTCTTCCCGGGGATTTCTGATTCTATCACTACCTCAACGGGTGTAAGTGAAAGAGAAAGGCTAGCATCAATTCAACATGAGATCTGGAGGGTTGCCAGAGCCATTCGCAGAGCTGCTTCTGCACTCACAGGAGAATTCACATAA 2094 0.5272 MMPKPMNVLTTKPSPLSTMVVVLIICILGFYAFHFPHPSAPSSASLNLSHLETLFLSTSSNSSISSYLRALTLHPHLAGTKPASDTTSYVLNHFASLGLQAHTATYTTLLSFPVRSSLAAHFGDGSSASLGVTEAAAGEGVVAAYHAYSPSGSVHARAVFANHGRERDYRALAAMGVNVSGCVVVVRKGGGMGRGAVVERAEANGAAAVLVYGEGGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGFEHSEVLKRFPKIPSMPLSAEVADTILSSLGGLPVPLEWRSTLRSKVRHVGPGPTMLNFTYQGEKKVATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRLSVLLGLGWKPRRTIVLCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWAAAGGGNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVTGVWGLLALHLADDSILPFNYISYANELQSYKNMLSNLIDQQISLHPLTTSIQEFASAAKEADDELKKLGLLETKGCFVDMKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVFGPSSDHERLNFFPGISDSITTSTGVSERERLASIQHEIWRVARAIRRAASALTGEFT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0744 697 SUPERFAMILY PA domain 109 325 IPR046450 -
Ssu4g0744 697 CDD M28_PSMA_like 253 545 - -
Ssu4g0744 697 Pfam Peptidase family M28 323 510 IPR007484 -
Ssu4g0744 697 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 15 694 IPR039373 -
Ssu4g0744 697 Pfam Transferrin receptor-like dimerisation domain 569 692 IPR007365 -
Ssu4g0744 697 Gene3D - 548 697 IPR036757 -
Ssu4g0744 697 Gene3D - 116 314 - -
Ssu4g0744 697 PANTHER GLUTAMATE CARBOXYPEPTIDASE 2 HOMOLOG 15 694 IPR034308 -
Ssu4g0744 697 Gene3D Zn peptidases 62 544 - -
Ssu4g0744 697 SUPERFAMILY Transferrin receptor-like dimerisation domain 544 694 IPR036757 -
Ssu4g0744 697 SUPERFAMILY Zn-dependent exopeptidases 58 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0744 Ssu-Chr4 11492424 11497690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0744 K01301 - gmx:100818733 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0744 4 11492424 11497690 Ssu4g0744 4 11492424 11497690 ECH
Ssu4g0744 4 11492424 11497690 Ssu7g2692 7 54209403 54217701 PCT