Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0720 ATGAACAAGAATGGCGTTATTCCGTGGATGAAGCAGCAATGGCGAGGCATAGTGAAAGTGCGTCTGAAGTGGGTGAAGAACCGAAGCCTGGACCACGTCATCGACAAGGAAACCGATCTGAAAGCCGCGTCCCTCCTAAAGGACGCCATCAACCGCTCCTCCACCGCCTTCGTCACGGCCAAGTCCGTCGCCGACTGGCAGAAGCTCCTCGGCCTCACCGTCCCCGTCCTCCGCTTCCTCCGCCGCTACCCCACTCTCTTCCACGAGTTCCCCCACCCCCGCTGGCCCTCCCTCCCGTGCTTCCGCCTCACCGACACCGCGCTCCTCCTACACTCCCAGGAACTCGCCATCCACCAGGCCCACCAAAACGACGCCGTCCTACGCCTCTCCAGGCTCCTCATGATGACCAACACACGCGCCCTCCCCCTCCACTCCCTCCACGCGCTCAGGTGGGACCTCGGGTTACCCGACTCCTTCGACAAAACCCTCGTCCCCCAATGCCCCGACGACTTCCGATTCGTCAAGTCCCCCAACGGCGTCGTTTCGCTGCGGCTATCGCGGTGGCCCGAGGAACTCGCGGTTTCCGCGTTGCAGAAGAGCAACGAGTGTGGGACCCACTACCGGGAGTTCAGGCGGGGACAATCCGCGTTGGCTTTTCCGATGCGGTTTCCGAGGGGTTACGGCGCGCAGAAGAAGGTGAAGGCGTGGATGGAGGAGTTTCAGAAGCTTCCCTATGTTTCTCCCTATGTGGATTCCTCGAAGATTGATCCTAACAGCGATTTGATGGAGAAGCGCGTGGTTGGGGTTCTGCATGAGGTTTTGAGTTTGACTCTGCACAAGAAGACCAAGAGGAACTACTTGAGGGGTTTGAGGGAAGAGTTGAATCTCCCGCATAAGTTTACCCGCATTTTCACGAGGTATCCGGGGATTTTTTACCTCTCGCTGAAGTGTAAAACGACTACGGTTACTCTCAGGGAAGGGTACCGGAGTGGGAAGCTGGTGGACCCGCATCCTCTTGCTCGGCATAGAGATAAGTTCTACCATGTCATGCAGACGGGGCTTCTTTATCGCGGTGATGGGTCGTTGAAAACCTCAGGAGAACAATTCGCTGCTTCAGAATGA 1122 0.5775 MNKNGVIPWMKQQWRGIVKVRLKWVKNRSLDHVIDKETDLKAASLLKDAINRSSTAFVTAKSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQELAIHQAHQNDAVLRLSRLLMMTNTRALPLHSLHALRWDLGLPDSFDKTLVPQCPDDFRFVKSPNGVVSLRLSRWPEELAVSALQKSNECGTHYREFRRGQSALAFPMRFPRGYGAQKKVKAWMEEFQKLPYVSPYVDSSKIDPNSDLMEKRVVGVLHEVLSLTLHKKTKRNYLRGLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYRSGKLVDPHPLARHRDKFYHVMQTGLLYRGDGSLKTSGEQFAASE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0720 373 PANTHER OS04G0546100 PROTEIN 10 361 - -
Ssu4g0720 373 Pfam Plant organelle RNA recognition domain 25 353 IPR021099 GO:0003723
Ssu4g0720 373 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 10 361 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0720 Ssu-Chr4 11204540 11205661 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0720 - - gmx:100808403 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0720 4 11204540 11205661 Ssu4g0720 4 11204540 11205661 ECH
Ssu4g0720 4 11204540 11205661 Ssu7g1720 7 35534030 35535294 PCT