Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0600 aTGATAACAATGGATACTCTGTGTTTACAAGGTAGTATTTCTGGGATAGCTCCGTCCATTCCCATTCCTGCAACTGCACGCGCCAATGATTGCGCGTCACAGTCTCAGGTGAGCGCTTTGGGGCGCTCTTCTTTGTTTTCCAGATTCTCTTTTAGATACCCTTTGAAGTCTCTATGGCCACGACCGACGGGGAATGCCGCCGGCTACAACGATGTCGCCGTAGACGACGCCGTTTTGGCGGAGAATGGAACGGCGGAGACAGAAGGTCAGAATGGGAGCTGGGTTTTCAAGAATTTTCATGGAAGGTCTGTTTGGAGAGGGGAACAGAGGAGCGATGATAACGACGAAGAGGAAGTTGTGGCCAATGATCAAACGGATGAAGAGGAAGAGTGTGATGGTTGTAgggttgatgatgatgaagaagaaaatgaagaggtTCGGTTCGATAGAGACTCGTTTTCGAGAATGCTTCGGAGGGTGTCATTGGCCGAAGCCACATTATATGCGCGCATCTCCCACTTGGGCAATTTGGCATACTCTATTCCCAAAATCAAACCGGGGAACCTCTTCAAAAACTATGGTCTGCGTTTTGTAACTTCATCCatagagaagaagaaattagCCATGGCAGCTGACAAAAATCAAGCATCTGCTGCAACAAAGAAAGAAGACACTTACGAGAAGGATTTGGGAGAAACAGAAGAGGAAAAGAATGTTGGATACAATATAAGTGCATCTGCTGCATACGAGATTGCTGCTTCTGCTGCCTCTTACCTCCATGGTCAGACAAGGAACATACTTCCGTTCAAATCTTCTGATGCTGTGGAAGGTGAAGGTTCGCATGAAGCAAACAATGAAGGCTTTAACGGTGATAAGATGATAAACACGGACGTGGCATCTTTGAGGGCAACTAATGATTCAGTAACAGCAGTAGTTGCCGCAAATGAGGAAGTAAAACAGGCTTTTGCAGATGATTTAAACTCAACCAGCTCTTCACCCTGTGAATGGTTCGTATGTGATGATGACCAGACCTGTACAAGATATTTTGTGATCCAGGGCTCCGAGTCCTTTGCATCCTGGCAAGCAAACCTACTATTTGAGCCAGTTCAATTTGAGGGGTTAGATGTCCATGTCCATAGAGGTATATACGAGGCTGCAAAAGGGACATATCAACAGATGTTGCCAGAAATTCGTGCTCACCTAAAATCTCATGGTTCCCGTGCAACTTTCCGTTTCACTGGTCATTCTCTCGGGGGGAGCTTGGCATTACTTGTAAATCTCATGCTGTTGATAAGGAAGGAAGCGCCATTCTCCTCTCTGCTTCCTGTCATAACTTTTGGCGCCCCATCCATCATGTGTGGAGGTGATAGTCTACTTGACAAGCTAGGATTGCCACGCAGTCATGTTCAGGCAATCACTATGCACAGAGACATTGTACCACGAGCATTTTCTAGCAACTACCCTAACCATGTGGCAGAACTACTAAAGGCTGTTAATGGTAACTTCCGTAATCATCCTTGCCTTAATAACCAGAAGCTATTATATGCACCAATGGGGGAACTGCTGATTCTGCAGCCAGATGAGAGTTTTTCACCAAGTCATCATCTTCTGCCCTCAGGCAGTGGTCTATATCTTTTGAGTGGTCCTTCGTCTGAATCCAATGACACAGCAAAACAGATCCACGCAGCTCAAATGGTCTTCTTGAACTCACCACACCCACTTGAGATACTAAGTGACCGATCTGCCTATGGATCTGGAGGAACCATTCAGAGAGATCATGACATGAATTCCTACTTGAAAGCTGTGAGAACCGTGATCCGCCAAGAACTTAACCAGATCCGTAAGGCAAGGAGAGAGCAAAGGCGAAAGGTGTGGTGGCCTCTTCTCGTGCCACGCGGAAGTGATGCTGGCATAGTTGTTGGGAGGTCCGCGGTCAATATGATTCAAGACCAGCCTCCCTTCTCTGGTATGATACAGACAGGTAGAGAGTCATTGAAAAGGTTCAGTAGGCTTGTTGCATCCCAACACATGCAATTGTTTGTAGTGCTCCTGTTTCCTGCACGGTTGTTACTCGTGGGAGCATGTAACTTAATTAGCTTAAGATGA 2106 0.4539 MITMDTLCLQGSISGIAPSIPIPATARANDCASQSQVSALGRSSLFSRFSFRYPLKSLWPRPTGNAAGYNDVAVDDAVLAENGTAETEGQNGSWVFKNFHGRSVWRGEQRSDDNDEEEVVANDQTDEEEECDGCRVDDDEEENEEVRFDRDSFSRMLRRVSLAEATLYARISHLGNLAYSIPKIKPGNLFKNYGLRFVTSSIEKKKLAMAADKNQASAATKKEDTYEKDLGETEEEKNVGYNISASAAYEIAASAASYLHGQTRNILPFKSSDAVEGEGSHEANNEGFNGDKMINTDVASLRATNDSVTAVVAANEEVKQAFADDLNSTSSSPCEWFVCDDDQTCTRYFVIQGSESFASWQANLLFEPVQFEGLDVHVHRGIYEAAKGTYQQMLPEIRAHLKSHGSRATFRFTGHSLGGSLALLVNLMLLIRKEAPFSSLLPVITFGAPSIMCGGDSLLDKLGLPRSHVQAITMHRDIVPRAFSSNYPNHVAELLKAVNGNFRNHPCLNNQKLLYAPMGELLILQPDESFSPSHHLLPSGSGLYLLSGPSSESNDTAKQIHAAQMVFLNSPHPLEILSDRSAYGSGGTIQRDHDMNSYLKAVRTVIRQELNQIRKARREQRRKVWWPLLVPRGSDAGIVVGRSAVNMIQDQPPFSGMIQTGRESLKRFSRLVASQHMQLFVVLLFPARLLLVGACNLISLR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0600 701 CDD Lipase_3 302 481 - -
Ssu4g0600 701 SUPERFAMILY alpha/beta-Hydrolases 330 516 IPR029058 -
Ssu4g0600 701 Coils Coil 216 236 - -
Ssu4g0600 701 Gene3D alpha/beta hydrolase 294 514 IPR029058 -
Ssu4g0600 701 MobiDBLite consensus disorder prediction 114 128 - -
Ssu4g0600 701 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 32 697 IPR043367 GO:0008970
Ssu4g0600 701 Coils Coil 599 619 - -
Ssu4g0600 701 Pfam Lipase (class 3) 349 484 IPR002921 GO:0006629
Ssu4g0600 701 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 32 697 - -
Ssu4g0600 701 MobiDBLite consensus disorder prediction 107 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0600 Ssu-Chr4 9635420 9638476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0600 4 701 Acyl Lipid Metabolism Gene Families AT1G02660 56.988 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0600 - - gmx:100788786 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0600 4 9635420 9638476 Ssu4g0600 4 9635420 9638476 ECH
Ssu4g0600 4 9635420 9638476 Ssu7g1954 7 38994964 38998271 PCT