Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0474 ATGGCTTCCACCACCGATAATCACATCTACgaaaacaaccacaacaacgGCTCCCACATAGCCAAAAAGCCCAAACTCGCTTCCTCCTCCCTCATAACCCCCTCCGAAATCGAATCCGAGTTCGGCCACCACGACGCCGCCGTGGCGCGCATCAACAACGGCAGCTTCGGGTGCTGCCCGGCCTCCATCCTCGCCGCGCAGCGCCGGTGGCAGCTCCGGTACCTCCGGCAGCCCGACCACTTCTACTTCAACGACCTCAAAACCGGGATCCTCCGATCCCGAACCCTAATCAGGGACCTCGTCAACGCGGACCACGTCGACGAGATCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCACGCCGCCTGGAACTTCCGGGAAGGAACGTTCCGGAAGGGCGACGTCGTCCTCATGCTCCACTACGCGTACGGCGCCGTTAAGAAATCCATGGAGGCGTACGTGACGCGCGCCGGAGGTAACGTCGTCGAGGTTCCCCTCCCGTTCCCGGTTAACTCTAACGACGAGATCGTTTCCGAGTTCAGGAAGGCGTTGGAGAGAGGTAACAGTGGCGGGAAGAGGGTTAGGTTAGCGGTGATCGATCACGTGACTTCCATGCCGTGTGTTGTTATTCCCGTTAAGGAGTTGATTCAGATTTGTAGGGAGGAAGGGGTAGATCAGGTTTTTGTCGATGCTGCTCATTCTATAGGGTGCACCGATGTAGATATGAAAGAAATTGGTGCTGATTTTTACACTAGTAATTTGCATAAGTGGTTCTTTTGTCCACCTTCCATTGCGTTTTTGTACACTCGCGGGAACCCTAAGGGTGCTGTTGCTGATTTGCAATTGCACCACCCTGTGGTGTCTGATGAGTATGGGAATGGGTTGCCTGCGGAGAGTGCTTGGATTGGGACCAGGGATTACAGCGCTCAGTTGGTGGTTCCCGCGGCGGTGGAGTTTGTTAACTGGTTTGAAGGAGGTATTGAGGGGATCAAGAGGAGGAATCATGAGGCTGTTGTGGAGATGGGGGAGATGCTGGCCAAGGCGTGGGGGACTCGGCTCGGGTGTCCGCCGCATATGTGTGCTAGCATGGTTATGGTTGGCTTGCCTGCTTCTTTGGGGATTGGTAGTGATTCTGATGCTCTCAGCTTGAGGACACATTTGAGGGATGCTTTTGGGGTTGAGGTGCCCATATATTATCGGCCGCCTAGAGAGGGGGAAGTTGGCCTGGTTACTGGCTATGCGAGGATTTCTCATCAGGTGTATAACAAAGTTGATGACTATTACAAGTTCAGGGATGCGGTTAACCAACTCGTGCAAGATGGGTTCACTTGTGGTGCTCTTTCGGATTGA 1365 0.5414 MASTTDNHIYENNHNNGSHIAKKPKLASSSLITPSEIESEFGHHDAAVARINNGSFGCCPASILAAQRRWQLRYLRQPDHFYFNDLKTGILRSRTLIRDLVNADHVDEISIVDNATTAAAIVLQHAAWNFREGTFRKGDVVLMLHYAYGAVKKSMEAYVTRAGGNVVEVPLPFPVNSNDEIVSEFRKALERGNSGGKRVRLAVIDHVTSMPCVVIPVKELIQICREEGVDQVFVDAAHSIGCTDVDMKEIGADFYTSNLHKWFFCPPSIAFLYTRGNPKGAVADLQLHHPVVSDEYGNGLPAESAWIGTRDYSAQLVVPAAVEFVNWFEGGIEGIKRRNHEAVVEMGEMLAKAWGTRLGCPPHMCASMVMVGLPASLGIGSDSDALSLRTHLRDAFGVEVPIYYRPPREGEVGLVTGYARISHQVYNKVDDYYKFRDAVNQLVQDGFTCGALSD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0474 454 PANTHER L-CYSTEINE DESULFHYDRASE 14 453 - -
Ssu4g0474 454 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g0474 454 Gene3D - 76 326 IPR015421 GO:0003824
Ssu4g0474 454 PANTHER ISOPENICILLIN N EPIMERASE-LIKE PROTEIN 14 453 - -
Ssu4g0474 454 SUPERFAMILY PLP-dependent transferases 50 444 IPR015424 -
Ssu4g0474 454 Pfam Aminotransferase class-V 88 363 IPR000192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0474 Ssu-Chr4 7544687 7546051 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0474 K22207 - gmx:100786129 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0474 4 7544687 7546051 Ssu4g0474 4 7544687 7546051 ECH
Ssu4g0474 4 7544687 7546051 Ssu7g1834 7 37000163 37001494 PCT