Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0452 ATGGCACTTGATATCACCACTGCTACTATTAATGCCAACGCTAAGCAACCCAAAGATGGTGGCGGAAGGATGTTTGTTTATGAGCCCAATTTGGTCATTTATTGTAATCTTCTCCAAACAATCCAAGTCACCAGGCCCACTTCCTTTGCTGAGCAAGATTTTCTGAACATATACTTCAAGGACAAATATAAGCCTATACCTAACATGTACAACCTTGTGCTAGCCATGTTGTGGCATCACCCCGAGAATGTTGAACTTGACAAAGTTCAAGTGCTATAA 279 0.4122 MALDITTATINANAKQPKDGGGRMFVYEPNLVIYCNLLQTIQVTRPTSFAEQDFLNIYFKDKYKPIPNMYNLVLAMLWHHPENVELDKVQVL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0452 92 SUPERFAMILY Nucleotide-diphospho-sugar transferases 24 85 IPR029044 -
Ssu4g0452 92 PANTHER GLYCOGENIN SUBFAMILY MEMBER 24 91 - -
Ssu4g0452 92 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 11 91 IPR029044 -
Ssu4g0452 92 PANTHER GALACTINOL SYNTHASE 2 24 91 IPR030515 GO:0006012|GO:0047216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0452 Ssu-Chr4 7348300 7352294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0452 5 92 Glycosyltransferase AT1G56600 60.227 4.12e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0452 K18819 - gmx:100800249 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0452 4 7348300 7352294 Ssu7g1817 7 36752402 36753674 PCT