Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0444 ATGTCTCTTGTGACAGAAGATGTCAAGGGCAGAGCCGAGGTGTACCACGGAGACGAACTCTGCCAAGTGAAGTCGAAGGAGCTTCTGAAGGAAATAGCCCTTCCCAACGGGCTCCTACCCCTGAAGGACATGGAGGAGTGTGGCTACGACAGGGAAAGGGGCTTCGTGTGGCTCAAGCAGAAGAAGAGTTACACCCACAAGTTTGAGAAGATTGGGAAGCTCGTGTCCTACGCGCCCGAGGTCACTGCCCACGTTGAGCACGGCAAGATCTCCAAGCTCACTGGGGTCAAGACCAAGGAGCTCTTGCTTTGGATCACGCTCAGTGATATCTACGTCGATGACCCACCCACCGGCAAAATTACCTTCAAGACCCCTGCCGGGTTGTTTAGGTCATTTCCTGTGTCTGCCTTCGAGATTGAGGAGGACTCCAAGGAGAGTAGGCGCGTGCACGATGCTGCCGCGCCTGTGCAAGTCAAAGAGGTCTGA 486 0.5494 MSLVTEDVKGRAEVYHGDELCQVKSKELLKEIALPNGLLPLKDMEECGYDRERGFVWLKQKKSYTHKFEKIGKLVSYAPEVTAHVEHGKISKLTGVKTKELLLWITLSDIYVDDPPTGKITFKTPAGLFRSFPVSAFEIEEDSKESRRVHDAAAPVQVKEV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0444 161 PANTHER PLANT/F25P12-18 PROTEIN 2 152 - -
Ssu4g0444 161 SUPERFAMILY At5g01610-like 4 144 IPR036758 -
Ssu4g0444 161 Gene3D - 6 148 IPR036758 -
Ssu4g0444 161 Pfam Protein of unknown function, DUF538 26 138 IPR007493 -
Ssu4g0444 161 PANTHER T31J12.3 PROTEIN-RELATED 2 152 IPR007493 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0444 Ssu-Chr4 7295357 7295842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0444 - - vra:106757663 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0444 4 7295357 7295842 Ssu7g1811 7 36697408 36697911 PCT