Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0440 ATGAGTTCTTCGGTAGCTGAAGTTGCCAAGAAGAAAGCAATGTGGCTGCATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGGCACACTGCTTGCTTCTCCAAGGGGCTTATGTATGTCTTTGGGGGCTGTTGTGGGGGGCTGCATTTTTGCGATGTTCTCACTTTGGACCTTAACAAAATGGTTTGGAGGAAGCTCAGTACCTCGGGTGAAAAGCCAGGGCCTAGAGATAGCCATAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAGGTGAATCATATTCATATACTTGATCTTGTGACCAATGAGTGGGTTCGACCCAAATGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACGCTTGTTGGTGATGAAAGGATAGTGATATTTGGTGGTAGTGGAGAAGGTCATGCTAACTACTTGAATGACTTGCATATTCTTGATCTTCGAACAATGAGCTGGACTTCCCCTGAGTTGAAGGGTGATTTGCCTGTCCCTAGGGACAGTCACAGTACCCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCCGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGGCAACAATGACTTGGTCTAGATTGACAATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGGCATGCTGCAGTGAACATTGGAACAAAGGTCTATATCATTGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATTTGCAATTTTTCATGGACTCAACTTGATATGCATTTTCAACAGCCGCAAGGGCGATTTTCTCATACAGCTGTTGTTGCAGGCATGAATATTGCAATATATGGCGGGTGTGGGGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATCGACGTTACTACATTCCCATGTGCAAACCTTTTGGAACTTATTGgaatcaagaaaagaaaattatcccAGGAAAAGCAGATACCAACTCGAAAACTATACTGGTGAGGAATAATGTGGAAGCTTTCGGAAAGGGAGCTTATGAAGTTGCATCAGAAAAAGCGCCACCTTATCACTTTGATTCAGgTACTTCACGACAGAAGAGGAGGAGAATTGCTGCATCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAGAAATTTCTTTCATTGTCCCTTCATTCATCTCCATATCAATCCGATCTAGAGCAGACCCCAAGtcaaaaaacaaatacattatttccaACCACTTGCCAACACGACAATGACTCAAATTATAAGAGAGCTTTGCAGCACATCCCACTTAAAAATCCACAAGATCTTCATTTCCTAGAACACCAACTAAAACAAGAACAATGTCTTTATGTTCACGAGGATAGAAAAAGAGCTCAACATCGGGCTTTAGAGCAGAAATCCATGGGGCGAGGACCCGTTCAACACTTGGTGATTCCTTTGCCTTATACTGCCACAATTTTTTCCTCTATTATTCCTAATTGCTCATTCTTTTCACTCTTGATTTAA 1578 0.4176 MSSSVAEVAKKKAMWLHPKVLGFNPSERWGHTACFSKGLMYVFGGCCGGLHFCDVLTLDLNKMVWRKLSTSGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTNEWVRPKCKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDLPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFSWTQLDMHFQQPQGRFSHTAVVAGMNIAIYGGCGEDERPLNELLVLQLGAEHPNRRYYIPMCKPFGTYWNQEKKIIPGKADTNSKTILVRNNVEAFGKGAYEVASEKAPPYHFDSGTSRQKRRRIAASKVWDVESEQEEKFLSLSLHSSPYQSDLEQTPSQKTNTLFPTTCQHDNDSNYKRALQHIPLKNPQDLHFLEHQLKQEQCLYVHEDRKRAQHRALEQKSMGRGPVQHLVIPLPYTATIFSSIIPNCSFFSLLI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0440 525 Gene3D - 121 358 IPR015915 GO:0005515
Ssu4g0440 525 Pfam Kelch motif 231 271 IPR006652 GO:0005515
Ssu4g0440 525 Gene3D - 15 120 IPR015915 GO:0005515
Ssu4g0440 525 PANTHER KELCH REPEAT DOMAIN 1 501 - -
Ssu4g0440 525 PANTHER OS01G0300900 PROTEIN 1 501 - -
Ssu4g0440 525 SUPERFAMILY Kelch motif 74 315 IPR015915 GO:0005515
Ssu4g0440 525 Pfam Galactose oxidase, central domain 39 85 - -
Ssu4g0440 525 Pfam Galactose oxidase, central domain 87 135 - -
Ssu4g0440 525 Pfam Galactose oxidase, central domain 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0440 Ssu-Chr4 7179281 7182697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0440 15 497 Acyl Lipid Metabolism Gene Families AT3G05420 26.946 2.57e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0440 K20285 - gmx:100814299 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0440 4 7179281 7182697 Ssu7g1794 7 36458777 36462691 PCT