Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0419 atgaaGACAGGCTCCatgattttttcattattcCATGTACCTAGATGTAGAATACAAAGCTTAGCTAACTATTGGGGTGAAACCTTCCACAGTTTCAGTACGACTTGTGGAAACAATTCTAGCATCAGGCTTCTTGGTTCTAGAATTTATGGTCTTCAGGGAGGACATAGAAAGAAGTGGACAAGACCTATAACTACAAATACAGAAGGCAACGGGAGCACCAAATCAAAAAGTGTCAAGCATGaaattttgagtgaaaccatTTTAGCAAGTGCTAcagtaaatgtaaataaaacacAGCTTGGACAATTCCAGGAAATTCAGTACTGTGACATACAACAAGAGATTGCTCAGAATAAAGACTTGTCTAGCTTAGTTACTGTTATTGTTTTTGATATTGAGACCACAGGGCTTAGCAGAGAGAATGAACGGATCATTGAAATTGCACTTCGAGATCTTCAGGGTGGTGAGAACAGCACTTTTCAGACTCTTGTAAACCCTCAATGCAAAGTTCCTAATTCACGTATTCATGGCATTACTACTCAGATGGTCAACAAACCTGATGTTCCAAGGATGGAGGACCTCATTCCCATCTTATTGCACTATGTTCGAAGTCGTGAGAAGCCTGGGGGATATGTGTTATTCGTAGCTCATAATGCTCGCTGTTTTGATGTACCCTTCATCATTAATGAGTTACGACGTTATTCTATGGAGATTCCTCCTAATTGGTTGTTTTTGGACACCCTTCCTTTAGCGCGTGAATTAATGAAGTCCGGAGGTCTCTTTCTCTCTGTTTCTCTTAACACGCGCGCACACATGCACGCACACACAAATACTTGCTGTTTCTGTGTTAAAACCTTAACTTTTTGCATGTTAACAGGAACAGAACTTTCTTCAACATCCCTTGCTGCCCTTCGTGACCTCTACGGAATTAAAGTGGATGGATCAGCTCACAGGGCCATGGTAGATGTGAACACATTGTCCTTGATTCTTCCCAGGTTGACCTTTGATCTGAAATTGACCCTATCTGGCCTTGTCAAAAAATCATTCACAGAGTCAGATATAATCAACtctaagaagaagaagaatttagACTAG 1098 0.3852 MKTGSMIFSLFHVPRCRIQSLANYWGETFHSFSTTCGNNSSIRLLGSRIYGLQGGHRKKWTRPITTNTEGNGSTKSKSVKHEILSETILASATVNVNKTQLGQFQEIQYCDIQQEIAQNKDLSSLVTVIVFDIETTGLSRENERIIEIALRDLQGGENSTFQTLVNPQCKVPNSRIHGITTQMVNKPDVPRMEDLIPILLHYVRSREKPGGYVLFVAHNARCFDVPFIINELRRYSMEIPPNWLFLDTLPLARELMKSGGLFLSVSLNTRAHMHAHTNTCCFCVKTLTFCMLTGTELSSTSLAALRDLYGIKVDGSAHRAMVDVNTLSLILPRLTFDLKLTLSGLVKKSFTESDIINSKKKKNLD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0419 365 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 292 362 IPR040393 GO:0008408
Ssu4g0419 365 CDD DEDDh 129 331 - -
Ssu4g0419 365 PANTHER POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED 292 362 - -
Ssu4g0419 365 PANTHER POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED 3 261 - -
Ssu4g0419 365 SMART exoiiiendus 127 340 IPR013520 -
Ssu4g0419 365 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 3 261 IPR040393 GO:0008408
Ssu4g0419 365 SUPERFAMILY Ribonuclease H-like 125 335 IPR012337 -
Ssu4g0419 365 Pfam Exonuclease 129 257 IPR013520 -
Ssu4g0419 365 Gene3D - 126 341 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0419 Ssu-Chr4 6818991 6822089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0419 - - gmx:100799702 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0419 4 6818991 6822089 Ssu7g1771 7 36183968 36186029 PCT