Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0172 atggaaagaagagaaaaaggtgaGAAAAGGGAAGGGTTAATGGTGGAAAAGTTGAAAGGAGGGGTTGTTGTGGGGAAAAGAGGAGGCCCTTCTACTCCCCCACCCACATGGAGACTTGAGTTTCCATCTCAGCAGAATGAGAATggtaacaacaaaaacaaaagcctGCTTCAAGAGTTCCTCAACATTCCCACTACCTCAACAACACTCTCTGCCAGAAACCTCTGTGCCAAACTCTGGCAAATTCAGCCCCACCAACTGGCCCCACTTCCCAAAATGAACAACCCTCCACTCACCCTCCGCCGCCACCCTGGGGACACACTTAATCCTAAACACTTGCCTGACCCTCCTCATACTCGCCGGCCAGCATCTGCTACGGGCTTGAGAAGACATGTTCAAACATCACTTGTCCAGCACCATAGATCAGTTAAAAGAAATGGTCGCACTAAACAGCCTATATCCCCTCCTTGTCACAGTACCTCAATGCAAGTGGCACCATATAATCATGTAAATCCTATAAGTTCCTTAGACTTCAAGGGTTGGATTACAGAGTCAAGTCGCAACCCTAAAACATCCAGAGAGTTGCTCAAGGTACTCAACCGTATCTGGTGTCTTGAAGAACAGCATGCATCAAATATATCAGTAGTGAAAGCCCTGAAAATGGAACTACATCTTTCTCGGGCACAGGTTAAAGAGTTACTACaagaaaagcaattaaataagcATGAAATGGAGAACTTAATGAAGGAAATAACTGAGGAGAAGCTTGTTCGGAAGAACAAAGAACACGATAAAATTAAATCTGCAATTCAATCTGTCATGCAAGAGATAGAAGATGAAAGGAGGTTAAGAAAGCATTCAGAAAGCTTGCACAGAAGGCTGGCTAGGGAGCTTTCTGAAGTGAAGTCTTCATTCTGTGGTTCTCTGAGAgatcttgaaaaagaaaaaaaagcacGGGTCCTTTTAGAGAATTTGTGTGATGATTTTGCCAAAGGAATAAGGGATTATGAATATGAGGTACGTTCTCTTATGCATAATAATGCTGAGAAGGGTCAAGCTAAAGGGGATAGCCTTGATAGGCTAATACTTCATCTTTCAGAAGCTTGGCTTGATGAGCGCAAGCAAATGAAGTTAGTTCGAGCTGGCCATGATCTCCCTCAGATAGATTCATCAATTGTTGACAAGTTAGGTGTTGATATTGAAACATTTCTTCATGCAAAAAGATCTGTTAAATTGAGAAGATATGGTAACTCCTCCACAAATGAGCCCAAGGAAATCTACCCTTGCCTACATTCATTGGATTCCTTTCCACTGAAGGAGGTCACAAGTGCACCTCCTAATATGGCTGAGGAAGACTGCATTAGCACCGACATTTTTGAGCAGAAAAGGACTTCAGAGAAAGGACTCAACAAACTTGGCTCCAAACTGAGCAACAACAACACTACAGAGGtccataaagaaaagaaaggaaggcaCAATTCAGTGAGGAAACAAGTTGAGTCCAAGGAAATCACTGAGGACTGTTGTGAGTTGCAAGGAAATATGATGAAGAACATGTCATGTGATGAAAATTATGAGAGTTGGTTTGTTGAGAGGAAATCAAGTGAAATTGGAGGGGACAGCACAGCTCTATTTAATACCCCTGGGGCATCAACTGTGTGTGAGGCAAGTGCAACACAAGGTCCACCAGAGAGTAATACACTATGGACAAAGAGAATGAATTCAAGTTACAGGCTTGATAACATAGTTAGAAACAGTTCCTTGTCTTCTGAAGGCAATGATAAGGTTTATCCCGAGAGTATTTTCAGGGAAGATTCATGTGTCCATCCTGCAGTTACTGGTAATGGTAGTCCTGTAAAACAGTGGAAATCTACATTGATTGTCCCTGATTTTGACAAGTCTGAGTCTTCTTCCAAATTGCCTATAAAGGACAGCAACACATTGATGGCAAAACTGCTTGAAGCAAGGTTGGAGAGGCACAAATCTCGCTCCACAGTTAGCATTAGCAAAAGCTCTTTTCGATCTGCCAGACAAGTTTGTGATGAGAAACATAGGAATGTGAGTAGTTGCAACGGTATCACATTCTGA 2088 0.4052 MERREKGEKREGLMVEKLKGGVVVGKRGGPSTPPPTWRLEFPSQQNENGNNKNKSLLQEFLNIPTTSTTLSARNLCAKLWQIQPHQLAPLPKMNNPPLTLRRHPGDTLNPKHLPDPPHTRRPASATGLRRHVQTSLVQHHRSVKRNGRTKQPISPPCHSTSMQVAPYNHVNPISSLDFKGWITESSRNPKTSRELLKVLNRIWCLEEQHASNISVVKALKMELHLSRAQVKELLQEKQLNKHEMENLMKEITEEKLVRKNKEHDKIKSAIQSVMQEIEDERRLRKHSESLHRRLARELSEVKSSFCGSLRDLEKEKKARVLLENLCDDFAKGIRDYEYEVRSLMHNNAEKGQAKGDSLDRLILHLSEAWLDERKQMKLVRAGHDLPQIDSSIVDKLGVDIETFLHAKRSVKLRRYGNSSTNEPKEIYPCLHSLDSFPLKEVTSAPPNMAEEDCISTDIFEQKRTSEKGLNKLGSKLSNNNTTEVHKEKKGRHNSVRKQVESKEITEDCCELQGNMMKNMSCDENYESWFVERKSSEIGGDSTALFNTPGASTVCEASATQGPPESNTLWTKRMNSSYRLDNIVRNSSLSSEGNDKVYPESIFREDSCVHPAVTGNGSPVKQWKSTLIVPDFDKSESSSKLPIKDSNTLMAKLLEARLERHKSRSTVSISKSSFRSARQVCDEKHRNVSSCNGITF 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0172 695 MobiDBLite consensus disorder prediction 104 158 - -
Ssu4g0172 695 MobiDBLite consensus disorder prediction 1 51 - -
Ssu4g0172 695 MobiDBLite consensus disorder prediction 481 499 - -
Ssu4g0172 695 MobiDBLite consensus disorder prediction 1 16 - -
Ssu4g0172 695 PANTHER INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-RELATED 6 673 - -
Ssu4g0172 695 PANTHER GB|AAF24581.1 6 673 IPR043424 -
Ssu4g0172 695 MobiDBLite consensus disorder prediction 470 499 - -
Ssu4g0172 695 Coils Coil 216 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0172 Ssu-Chr4 2839284 2843016 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0172 - - pvu:PHAVU_006G109400g 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0172 4 2839284 2843016 Ssu4g0172 4 2839284 2843016 ECH
Ssu4g0172 4 2839284 2843016 Ssu4g2884 4 73666249 73670468 PCT