Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0138 ATGGGCGAGCATGAGGGGTGGGCACAGCCACCAAGTGGGATATTGCCAAATGGTTTGCTGCCCAATGAGGCCGCATCGGTGATGCGAGTGCTCGACATGGAGCGCTGGTCAAAGGCTGAGGAAAGGACTGCAGAGCTCATTGCCTGCATTCAGCCTAATCCGCCCTCCGAGGAGCGCCGCTATGCAGTTGCAGACTATGTGCAGCGGCTGATCATGAAGTGCTTCCCTTGCCAGGTGTTCACCTTTGGGTCAGTACCCCTCAAAACTTATTTACCTGATGGAGATATTGACTTGACAGCATTCAGTAAGAATCAAAATATGAAGGATGTGTGGGCACATCAGGTTTGTGACATGCTcaagaatgaggaaaaggatgAAAATGCAGAGTTTCGTGTCAAAGAGGTTCAGTACATCCAGGCTGAAGTGAAGATTATAAAGTGTCTTGTTGAGAATATTGTGGTAGACATTTCATTTAACCAGCTTGGAGGATTGTGCACCCTTTGTTTTCTTGAGGAGGTTGATAATTTGATTAACCAAAACCATTTATTCAAGCATAGCATTATACTTACAAAAGCCTGGTGTTACTATGAGAGTCGTATACTTGGCGCCCACCATGGACTTATCTCAACTTATGCATTAGAAACTTTGGTTCTTTACATATTTCATGTTTTCAACAATTCCTTTGCTGGACCATTTGAGgtattgtataGGTTTTTGGAGTTTTTTAGTAAGTTTGATTGGGATAATTTCTGTGTAAGCCTATGGGGTCCTGTACCCATTAGTTCACTCCCAGATGTGACAGCTGAACCTCCTCGGAAAGATGGTGGAGATTTACTGCTCAGTAAGTTATTTCTTGATGCTTGCAGCTCAGTTTATGCTGTTTTCCCTGGTGGCCAAGAAAATCAGGGGCAACCATTTTCTTCCAAGCATTTCAATGTTATTGATCCTCTGCGTGTCAACAATAACCTAGGGCGTAGTGTCAGCAAAGactgA 993 0.428 MGEHEGWAQPPSGILPNGLLPNEAASVMRVLDMERWSKAEERTAELIACIQPNPPSEERRYAVADYVQRLIMKCFPCQVFTFGSVPLKTYLPDGDIDLTAFSKNQNMKDVWAHQVCDMLKNEEKDENAEFRVKEVQYIQAEVKIIKCLVENIVVDISFNQLGGLCTLCFLEEVDNLINQNHLFKHSIILTKAWCYYESRILGAHHGLISTYALETLVLYIFHVFNNSFAGPFEVLYRFLEFFSKFDWDNFCVSLWGPVPISSLPDVTAEPPRKDGGDLLLSKLFLDACSSVYAVFPGGQENQGQPFSSKHFNVIDPLRVNNNLGRSVSKD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0138 330 Gene3D - 161 330 - -
Ssu4g0138 330 PANTHER NUCLEOTIDYLTRANSFERASE 1 329 - -
Ssu4g0138 330 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 1 329 - -
Ssu4g0138 330 Gene3D Beta Polymerase, domain 2 52 160 IPR043519 -
Ssu4g0138 330 CDD NT_PAP_TUTase 59 166 - -
Ssu4g0138 330 Pfam Nucleotidyltransferase domain 78 145 IPR002934 GO:0016779
Ssu4g0138 330 SUPERFAMILY PAP/OAS1 substrate-binding domain 182 329 - -
Ssu4g0138 330 SUPERFAMILY Nucleotidyltransferase 21 201 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0138 Ssu-Chr4 2318801 2325803 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0138 - - pmum:103332451 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0138 4 2318801 2325803 Ssu4g2929 4 74702584 74709137 PCT