Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3177 ATGATTCAGATCGCTAATATGAGACTCGAATCAGGGACTTGTAATGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTCATGGGGTCAAAGGCTGAAGAATTCTCTGATGAAAACTGTCGCTTAGGGGAGGCTAATCAGCATTGTACTGATAAGAGTGATGGATCTTCTCTTAGGAGCAGAGCTTGTGAAAGATTGAAGCATGCTGTCAGTGAAACCAGTCACATGCCTAGTGTTTCTTCCACTCATGACTCTCTATCTGAAAATGCTGAGAATAGACGAGCCTTATCAGAGAAGTATCAGGATTCCAAGTGTTTAGAAAGTCTTGATGATAGCACTTCTTGTATCAGTAGGACCAGTAATGCTAATTTAGCGAGCAGTAGCCATCAAATAAATACAGACAGAATAAATATATCTTGTAGTTCAAGTTCAGTTAGTCACTTAGGGGCAGAAGGATCTGGAAATGGGCCATCTGTTGACATGTCTGGTTTGTCAGAATACTGTATGGAAAATGTTGATGCATCGTTGGCCAAAGAGAGAGTACCTATTATTGTTCCTGGTGAAAAATCTCTGGCAGATAAGGAAAACCTAAATAACAGTACAGCCAAGGTTTCAATAGAAATATTTCCAAAGTCAGAAGCAGATACTGAAAATAATGTTGATGTTgctaaagataaagattataaatattcaacCCATGATGGACTACATGAGAAGGTTGAGGAGCTGGTTAAATCACCTGGCAGGGCTGAACCTCAATCAGAAGATGAGAGTGATGAATCAGATGTtgttgagcatgatCTACTGCATGCGGAAATGCTTGAGAAGGTCCCTGAAGGGGACTGGTTATGTGAAGAATGCAAGTATGCAGAAGAAACTGCAAATCGAAGGCTAGatattgaagaaaaaaaaattcaagttagTTCAACTTCACAAATTTCTGGTAAAAGACCTTCTGAAAGCATGGAAATAGCTACAGCAGCAAAAAGGCAAGCTCTTGAATCAAGGACAGGATCACCAAAGGCATCAAGCCCCAAGAGAATAGTTCCACTGTCACGAGAGTCTTCATTCAAGAGTGTAGATAAAGGAAAGATGAAATCTGGTCAACAGATCCCCATGCGTAACCACCTTGGTGGCGATGACATAGAACTTGCCCGTTCTCTTTCCACTGGCCCTCGGAGTCAAAATGCAAGGAGTACATTGTTGAAGTCTAATTCATTCAACAACTTCAATTCCAAGCCAAGAGTCAAACTGGTTGATGAAGTTGTTCCCCAAAAGCAGAAAGGGGGTGTTGAACATATTTCTAAGAATATGGAGACACCTGCTGGGATGATAAGCAAATCAATGTCATTCAAATCCTCAAATTTGGGTCGTTCAAGTGCTAATgaatcaaaagttaaaatgcTTTCTTCTAAGCCTGGAACTGCTCAGGATTTGAAAGCATCAAGACATGCAAAAGAGTCAGGTTCATTTGACAGGATATTTCTGTCTAAGATTGATCGACCTGTCATTTGTTCAACCATGGTTAGTTCTGTTGTTTCCTCATCAAAGGGTGATCAGAAGCCAACACCACTTGGTGAAACTGCTAAACCTTCGACAGTTAACAACAACCAAGAGTTCAAGGTCAACCAAGAtggaaaattatattcattatcaAAGTCTAATAGAAACAGTAGAAGTCCAGAACCTCAAGTTAGTTCAGACAGAACATCAACCAGTGTTGATGAAACTCAACAGGATAGGCTGCCTCAATCACAGGAAACAGCTAGTCAGGTTGACAAAACCAAAGATTGTTCTAGTGATTGTTTCAAAGAGGAGATGCATAAGGGAAGTAGATTGAAAGCTGCAATCCAGGCAGCTTTGCTTAGAAGGCCCGAAATACACAAGAAGAAAGAAGCTCTTGATCAAACTAATGAGTTTCCTACATCAAGCACTGGTTTGAAATGTGAAGTCACTTCTCAAAACCAAGTGTTGGTTTCCAACACATTGAAAAATAGTATATCTGCTGAAGAAACCAATATGAAGCAGGATATCATTGAGAATTCTACATTTGAAACCTCCAAATGTCCATCTGCCTGTGATTTGAAGCAACTTAAATTTTGTCGAACTGATTTCTGCTCTCAGCTGAGAAAGTCAGATTCTGTTGGTCCTACTTCTGGAAAGCCTGTAGTGAGAGACTTGCCCATTAATTCCCTGGCAATCTCAAGTGTTCTTTCAAAGATGTCAGTTATTCCAGAATATGAGTACATCTGGCAGGGTGTCTTTAAAGTGCATAGAAATGGAAAGCCACCTGACTTGTATTCTGGAATTCAAGCACATTTATCTGCATGTGCTTCCCCTAAGGTTGTTGAGGTAGTAAACACATTTTTACCTGAAGTTGCCCTAAATGAAGTTTCTCGTTTGAGCACATGGCCTTCACAATTTCATCAAGGTGGTGCTAAGGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACGTTGAAAGTTATCAGAGACACTTCAAGGGTCTACTGGATCACATGATTAGAAATGATTTAGCACTTAGGGGGACTTTTGATGGTGTTGAACTTCTCATATTTGCATCCAATCAGCTTCCAGAAATTTCACAACGTTGGAATATGTTATTTTTCCTATGGGGTATATTTAGAGGGAGGAGGATCAATCATTCAGATTCAGCAAAAAAGATATGTATTCCCAGTTTGAATGTGATGCCAAATGAGAAGGATTTTCCAACTGCTGTCATGACTTTGTCTGAAACTCGGTGTTCACCAAAGCGCATGGATGAAGAGTCCATTGACCAAGGTCAAAATATTGTAAGTAGGAATTTTGATAGCAAAGAAACTATTTTTGACCAGACACATTTGGGCTTACAAGTAGACTTAGAGAGACAAGATAGTAGAATCAACACCAAATCTACATCGGGGATTCTGACCACCAGTACACAATTGTGTCCAGAAATGAATTCCACTGGTTCGTCCCTGAGAGAGAGTGTACCAGAGCATCGACAATACACAGAATCTAAACCTCCTGAAGCAATGGGAACTGGTGTAAGTAGTAGGATTGTggaaacaaaaactaattatgATATTTCTGTTAAGCAAGAGAACTCTTTGTCTTCGGGGATCCCTTCTATTGGTTGCCAAGAGATAGATACTGCAAGCAATATCAGTAAGGATAAAATTTTGGAGAGAACAAACAATGATGAAAATCAACAAAGGCCTAAAAGGAAACAAATGGAAGATGATCTCAATATGAGCGTGGAGGCAACGCTTCAGGGAGACCTGACTCTGAAAGGGTTCAACTATCAACTACCTAATGATAAAAAAGTTCAGCATATAGATCTTTCAGATACAGTTGTGGAGGCTTCTGCAGTTAGTTGTCAGAAAATGCCTTGGAATGAGGTAAATGGAAAACTGGAAGGCAGAGAAAGTTTTAGCAAGAAGCTGCAAACAGGTTTTGGTGGAATTTATGGACGTTACGATTCAGGAGCCAGGGGCTCTTTTAATGGCAGTTTTGCATCACTTGGAAATGATCTTGGTTCCTGTTCTTCAGTTGAGGACAAAGGGTGCAAAGAAGCTTGTGACGAGAAAATCATCCACGAGGATTTTGGAACGAAGGAAAGAACCTTCTTTCCTGTTGATACTCGTAATAAAAATGACTCGGGAATGGTGCTGAATAGCGAGTCACTGAATGGGCCTCGTGAGTACGTGGAGCAATTTCAAGTTGGGATTCCAAATCTAGAGCTTGCTTTGGGGGGTGAAACGAAACCATCACACAAGGGTATGCTGCCTTTCTTTGTTGGTGCAGTTGACAAGAAAAATAACCAGGAAAAGACGCCAGATATATTGACAGATGAGCGAGAGGATGAAAGCGTTGCTGCATCTCTTTCCCTGTCTCTATCCTTTCCATCTTCAAACAAGGAACACATCAAACCTGTTTCAAAAGCTGAGCCTTCACCTGATGGGCATAATGTGAATACGTCGTTTCTCCTTTTTGGGAGATTCACGGACAAATAA 4029 0.3956 MIQIANMRLESGTCNVCSAPCSSCMHLNRALMGSKAEEFSDENCRLGEANQHCTDKSDGSSLRSRACERLKHAVSETSHMPSVSSTHDSLSENAENRRALSEKYQDSKCLESLDDSTSCISRTSNANLASSSHQINTDRINISCSSSSVSHLGAEGSGNGPSVDMSGLSEYCMENVDASLAKERVPIIVPGEKSLADKENLNNSTAKVSIEIFPKSEADTENNVDVAKDKDYKYSTHDGLHEKVEELVKSPGRAEPQSEDESDESDVVEHDLLHAEMLEKVPEGDWLCEECKYAEETANRRLDIEEKKIQVSSTSQISGKRPSESMEIATAAKRQALESRTGSPKASSPKRIVPLSRESSFKSVDKGKMKSGQQIPMRNHLGGDDIELARSLSTGPRSQNARSTLLKSNSFNNFNSKPRVKLVDEVVPQKQKGGVEHISKNMETPAGMISKSMSFKSSNLGRSSANESKVKMLSSKPGTAQDLKASRHAKESGSFDRIFLSKIDRPVICSTMVSSVVSSSKGDQKPTPLGETAKPSTVNNNQEFKVNQDGKLYSLSKSNRNSRSPEPQVSSDRTSTSVDETQQDRLPQSQETASQVDKTKDCSSDCFKEEMHKGSRLKAAIQAALLRRPEIHKKKEALDQTNEFPTSSTGLKCEVTSQNQVLVSNTLKNSISAEETNMKQDIIENSTFETSKCPSACDLKQLKFCRTDFCSQLRKSDSVGPTSGKPVVRDLPINSLAISSVLSKMSVIPEYEYIWQGVFKVHRNGKPPDLYSGIQAHLSACASPKVVEVVNTFLPEVALNEVSRLSTWPSQFHQGGAKEDNIALYFFAKDVESYQRHFKGLLDHMIRNDLALRGTFDGVELLIFASNQLPEISQRWNMLFFLWGIFRGRRINHSDSAKKICIPSLNVMPNEKDFPTAVMTLSETRCSPKRMDEESIDQGQNIVSRNFDSKETIFDQTHLGLQVDLERQDSRINTKSTSGILTTSTQLCPEMNSTGSSLRESVPEHRQYTESKPPEAMGTGVSSRIVETKTNYDISVKQENSLSSGIPSIGCQEIDTASNISKDKILERTNNDENQQRPKRKQMEDDLNMSVEATLQGDLTLKGFNYQLPNDKKVQHIDLSDTVVEASAVSCQKMPWNEVNGKLEGRESFSKKLQTGFGGIYGRYDSGARGSFNGSFASLGNDLGSCSSVEDKGCKEACDEKIIHEDFGTKERTFFPVDTRNKNDSGMVLNSESLNGPREYVEQFQVGIPNLELALGGETKPSHKGMLPFFVGAVDKKNNQEKTPDILTDEREDESVAASLSLSLSFPSSNKEHIKPVSKAEPSPDGHNVNTSFLLFGRFTDK 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 73 97 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 1064 1084 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 987 1002 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 1308 1327 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 310 380 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 516 600 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 987 1021 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 247 266 - -
Ssu3g3177 1342 PANTHER - 1089 1333 - -
Ssu3g3177 1342 PANTHER - 608 1088 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 454 491 - -
Ssu3g3177 1342 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1089 1333 - -
Ssu3g3177 1342 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 275 606 - -
Ssu3g3177 1342 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 272 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 516 601 - -
Ssu3g3177 1342 PANTHER - 275 606 - -
Ssu3g3177 1342 PANTHER - 7 272 - -
Ssu3g3177 1342 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 608 1088 - -
Ssu3g3177 1342 MobiDBLite consensus disorder prediction 454 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3177 Ssu-Chr3 87845401 87851937 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3177 - - gmx:100784908 2167.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3177 3 87845401 87851937 Ssu2g3051 2 92143639 92151562 ECH
Ssu3g3177 3 87845401 87851937 Ssu3g3177 3 87845401 87851937 ECH