Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3140 ATGTCTGTGGTTTGTGAAATATGGTTTGCCTTTTCTTGGCTTCTGGATCAACTGCCCAAGCTATGCCCAATAAATCGTTCCACAGATCTTAATGTTCTGAAGGAAAAATTTGAAATGCCAAGTCCTAACAATCCTACTGGAAAGTCTGATCTACCGGGCATAGATGTCTTTGTCTCTACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTATCTATTTTAGCAGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACATTTGAGGCAATGGCTGAAGCTGCCAGTTCTGCTAATAGAGATCCCTACAAAAACAAAGtgaaatcaaattttgtcaaGGATCGCAGACGGGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGGATCAACGGTCTGCCTGACTCTATCCGGCGCCGGACAGATGCCTTTCATGCAAGAGAGGAAATAAAGGCCATGAAACTTCAGAGACAAAACAAGGAAGATGAACCTGTAGAACCTGTAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCACTGGCCAGGGACTTGGTTGAACTCTTCACCTGAGCACTCTAGGGGTGATCATGCTGGTATAATTCAGGGATCGGATGGCACATGGCCCATCCTTTTTAGGTCCAGCGGAAAAAAGGGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCCGGGGCCATGAATGCCTTGGTTCGAGCCTCAGCCATCATGTCCAACGGTCCTTTTATACTCAATCTTGACTGTGACCACTACATCTACAACTCCAAGGCAATGATGGAAGGTATGTGCTTTATGATGGATCGTGGTGGTGACCGCATTTGCTATGTCCAGTTCCCTCAGAGGTTTGAGGGGATTGACCCCTCTGATAGATATGCCAATCATAACACTGTCTTCTTTGATGTAAACACGAGGGCCCTTGATGGACTACAAGGGCCAGTCTATGTAGGAACTGGTTGTCTTTTTAGAAGGGTTGCCCTTTATGGTTTTGACCCTCCCCGCTCTAAAGAACGCCATCCTGGTTGCTGTAGTTGCTGCTTTGGCAGTAGGAAGAAGAATGCTAACATCTCTGAAGAGAAACTGGCACTGAGGATGGGTGATTCtgatgaagaagaaataaatctATCAATGTTCCCCAAAAAGTTTGGAAACTCAACTTTCCTCATTGACTCAATCCCAGTGGCAGAGTTCCAAGGCAGGCCACTTACTGATCACCCTGCAGTGAAGCATGGACGCCCTCCCGGCGCTCTCACCATACCGCGTGAGCTTCTTGATGCATCAACTGTGGCAGAGGCCATCAGTGTGATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGACACCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTTACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTTACCAAGCGCGATGCATTCCGCGGAACTGCTCCCATCAATCTCACTGACAGGCTGCATCAAGTCCTTAGATGGGCAACTGGCTCAGTTGAAATATTCTTCTCAAGAAACAATGCACTTCTGGCTAACCCAAGAATGAAGTTTCTTCAAAGAATTGCATACCTTAACGTTGGAATCTATCCATTCACTTCCATATTCCTTATTGTCTACTGCTTCCTTCCTgctctctccctcttctctgGCCAATTCATTGTTCAAACTCTCAATGTCACCTTTCTTGCTTATCTCCTGACCATCACTGTGACATTGTGCATGTTGGTGGTGCTCGAAATCAAGTGGTCTGGCATTGAGCTGGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAGGTGCACCCCTAGCTGCTGTGCTGCAGGGTTTGCTCAAAGTCATAGCAGGTATTGAAATCTCATTCATCTTGACATCAAAATCTGCTGGGGATGATGTAGATGATGAGTTTGCTGATCTCTATGTTGTCAAGTGGATATCCCTTATGATACCAATCACAATTATGATGGTTAACTTAATAGTAATAGCAGTTGGAGTTAGCAGGACCATATACAGTGTCATACCTCAGTGGAGCCGTCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTCTTGACCCATCTCTACCCTTTCGTAAAAGGTTTGATGGGAAGAAGAGGGAGGACACCTACCATTGTTTTTGTATGGTCAGGCCTCATATCAATCACAATATCACTCCTTTGGGTGGCAATCAATCCCCCTGCTGGTACCAACCAAATTGTTGGTTCATTCCAGTTCCCATGA 2331 0.4444 MSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLKEKFEMPSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASSANRDPYKNKVKSNFVKDRRRVKREYDEFKVRINGLPDSIRRRTDAFHAREEIKAMKLQRQNKEDEPVEPVKIPKATWMADGTHWPGTWLNSSPEHSRGDHAGIIQGSDGTWPILFRSSGKKGEKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMMEGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNTRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKERHPGCCSCCFGSRKKNANISEEKLALRMGDSDEEEINLSMFPKKFGNSTFLIDSIPVAEFQGRPLTDHPAVKHGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGHRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLANPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLTITVTLCMLVVLEIKWSGIELEEWWRNEQFWLIGGTGAPLAAVLQGLLKVIAGIEISFILTSKSAGDDVDDEFADLYVVKWISLMIPITIMMVNLIVIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFVKGLMGRRGRTPTIVFVWSGLISITISLLWVAINPPAGTNQIVGSFQFP 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3140 776 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 113 - -
Ssu3g3140 776 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 1 113 - -
Ssu3g3140 776 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 233 774 - -
Ssu3g3140 776 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 774 - -
Ssu3g3140 776 Coils Coil 156 176 - -
Ssu3g3140 776 Pfam Cellulose synthase 113 766 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu3g3140 776 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 113 216 - -
Ssu3g3140 776 SUPERFAMILY Nucleotide-diphospho-sugar transferases 69 571 IPR029044 -
Ssu3g3140 776 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 214 351 IPR029044 -
Ssu3g3140 776 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 113 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3140 Ssu-Chr3 87405570 87410733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3140 1 776 Glycosyltransferase AT3G03050 81.432 0.0 1382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3140 K20924 - gmx:100792604 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3140 3 87405570 87410733 Ssu2g3035 2 91946040 91950076 ECH
Ssu3g3140 3 87405570 87410733 Ssu3g3140 3 87405570 87410733 ECH