Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3035 ATGGCCTCAAAATTGTTTAGGGCAAGCCGATCAGCTATATCAGCAACATCTGACTCATCTGAAGGCCAGAAGCCCCCTTTACCTCCAACCGTAACATTTGGCCGGAGAACTTCCTCGGGTCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAACTAGGGAGTACTGACTTCATGAATTATACAGTGCATTTACCACCAACCCCCGATAACCAACCTATGGATCCATCTATCTCACAAAAAGTTGAGGAGCAATATGTGTCGAATTCACTTTTCACAGGTGGATTCAACAGTGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAATCATCCGCAGATGGCTGGTGCAAAAGGATCTTCATGTGCAATTCCTGGTTGTGATTCTAAGGTGATGAGCGATGAACGTGGTGCTGATATTCTTCCATGCGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTAAAAACAGGAGGTGGGATATGCCCAGGATGCAAGGAGCTGTATAAGAACACAGAACTAGATGAAGTGGCTGTAGACAATGGACGTCCCCTTCCACTTCCTCCACCGAGTGGAATGTCTAAGATGGAGAGGAGATTGTCCTTGATGAAGTCAACAAAATCAGCATTAATGAGAAGCCAAACTGGAGACTTTGATCATAATAGGTGGCTCTTTGAAACAAAGGGGACCTATGGCTATGGCAATGCTATATGGCCAAAGGAAGGTGGTTTTGGAAATGAAAAAGAGGATGATGTTGTTGAGCCAACTGAATTGATGAACAGACCCTGGAGACCACTTACAAGGAAACTGAAGATACCTGCTGCTGTTTTGAGTCCGTATCGTCTTATCATTTTTATTCGTTTGGTTGTCTTGGCACTGTTCCTGGCATGGAGGATCAAACACCAAAATACTGATGCAGTCTGGCTATGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCGTTTTCCTGGCTTCTGGATCAACTGCCCAAACTATGCCCTGTGAATCGTTCCACAGATCTCAATGTTCTGAAGGAGAAATTTGAAACACCAACCCCAAACAATCCTACTGGAAAATCTGATCTTCCAGGCGTAGATGTCTTTGTTTCTACTGCTGATCCTGAGAAAGAACCTCCTCTTGTCACTGCAAACACTATCTTGTCTATTTTAGCTGCTGATTACCCTGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGCGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGTGTGGGTTCCCTTTTGCCGTAAACATGATATAGAGCCCAGGAATCCTGAATCATACTTCAACTTAAAAAGAGACCCTTACAAAAACAAAGTGCGGCCAGATTTTGTCAAGGATCGTAGACGGGTGAAGCGTGAGTATGATGAGTTCAAGGTTAGGATCAATAGTCTGCCTGATTCAATCCGTCGCCGGTCAGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAACAGGGAAGATGAACCTGTAGAACCTGTAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGAACTTGGTTGAATCCTACATCTGAGCAATCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCGATGAACCTCTTCTTGGAAGTGCCGATGATACAAAGCTCATTGACCTGACCGATATTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCACGAGAGAAGCGTCCTGGTTATGATCACAACAAAAAAGCCGGGGCCATGAATGCCTTAGTTCGAGCCTCAGCTATAATGTCTAATGGTCCATTTATACTCAATCTTGACTGTGACCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGAGGTGACCGCATTTGTTATGTCCAGTTCCCCCAGAGGTTTGAAGGGATTGATCCCTCTGATAGATACGCTAACCATAATACTGTCTTCTTTGATGTCAATATGCGAGCCCTTGATGGACTTCAAGGACCGGTCTATGTGGGAACTGGGTGCCTTTTCAGACGGATTGCACTTTATGGTTTTGACCCTCCCCGTTCTAAAGAGCACCACACGGGTTGCTGTAGTTGTTGCTTTGGTCGTCAGAAGAAGCATGCATCAATGGCAAGCACCCCAGAAGAGAATCATGCACTGAGGATGGGTGATTCTGATGATGAGGAAATGAATCTATCATTGTTCCCTAAGAAGTTTGGAAACTCAACTTTCCTCATTGACTCAATTCCAGTGGCAGAGTTCCAAGGTCGACCACTAGCTGATCACCCTGCCGTGAAAAATGGACGCCCACCTGGTGCTCTCACCATACCCCGTGATCTTCTTGATGCATCAACTGTCGCAGAGGCCATCAGTGTCATCTCCTGTTGGTATGAAGACAAGACTGAGTGGGGACAGCGCGTTGGATGGATCTATGGATCTGTGACAGAGGATGTGGTCACTGGGTATAGGATGCACAATAGGGGATGGAAATCCGTTTACTGCGTGACCAAGCGTGATGCCTTCCGCGGAACGGCTCCCATCAATCTCACTGACAGGCTGCATCAGGTCCTTAGATGGGCTACTGGCTCAGTTGAAATATTCTTCTCGCGAAACAATGCACTCCTGGCTAGCCCAAGAATGAAAGTTCTTCAAAGAATTGCATACCTAAATGTTGGAATCTATCCATTCACATCCATATTCCTAATTGTCTACTGCTTCCTTCCTGCACTGTCCCTCTTCTCTGGCCAGTTCATTGTTCAAACCCTCAATGTCACTTTTCTTTCTTACCTCTTGGGCATCACTGTGACTTTGTGCATACTTGCAGTGCTTGAAATTAAGTGGTCCGGCATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACCAGTGCCCATCTAGCTGCTGTGCTTCAGGGTTTGCTCAAAGTCATAGCAGGGATTGAAATCTCATTCACCTTGACTTCAAAATCTGGTGGTGATGATGTAGATGATGAGTTTGCTGATCTCTATATTGTCAAATGGACATCCCTTATGATACCACCTATCACAATTATGATGATTAACTTAATAGCAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTCATACCACAGTGGAGCCGTCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTCTTGGCTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAGGACACCTACCATAGTTTTTGTATGGTCAGGCCTCATAGCTATCACAATTTCTCTCCTCTGGGTGGCTATCAATCCCCCTGCTGGTTCTAACCAAATTGGGGGTTCATTCCAGTTCCCATGA 3432 0.4484 MASKLFRASRSAISATSDSSEGQKPPLPPTVTFGRRTSSGRYVSYSRDDLDSELGSTDFMNYTVHLPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAIPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKELYKNTELDEVAVDNGRPLPLPPPSGMSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEKEDDVVEPTELMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLALFLAWRIKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGVDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRPDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKVQRQNREDEPVEPVKIPKATWMADGTHWPGTWLNPTSEQSKGDHAGIIQVMLKPPSDEPLLGSADDTKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHTGCCSCCFGRQKKHASMASTPEENHALRMGDSDDEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKVLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMINLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGSNQIGGSFQFP 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3035 1143 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 580 714 IPR029044 -
Ssu2g3035 1143 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 34 1141 - -
Ssu2g3035 1143 SUPERFAMILY Nucleotide-diphospho-sugar transferases 388 714 IPR029044 -
Ssu2g3035 1143 MobiDBLite consensus disorder prediction 9 38 - -
Ssu2g3035 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Ssu2g3035 1143 SUPERFAMILY RING/U-box 112 181 - -
Ssu2g3035 1143 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 34 1141 - -
Ssu2g3035 1143 MobiDBLite consensus disorder prediction 1 38 - -
Ssu2g3035 1143 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Ssu2g3035 1143 Pfam Cellulose synthase 373 1133 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3035 Ssu-Chr2 91946040 91950076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3035 6 1143 Glycosyltransferase AT3G03050 84.978 0.0 2044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3035 K20924 - gmx:100792604 2288.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3140 3 87405570 87410733 Ssu2g3035 2 91946040 91950076 ECH
Ssu2g3035 2 91946040 91950076 Ssu2g3035 2 91946040 91950076 ECH