Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2710 ATGACCATGGACCGTGACCGAGCGTCGCAGAGCAGTTCAGACTCACCCTCCCGAGACACGAAAGTGTTATCCATAGAGTGTCTCAAAGGAAGTTCCAAAGGCGATGAGTGGACCGGTGACATGCTTCAAACCGGGGACATCGTCGAAGAGCTTCGAATCGGAGCCTCCCCCAACGCGCTTATCCGCTTCAAATCGCCCTTCAAAAACGGAAAAAACGGCGTCAGCAAGATCCTGCAGGACTCTTACAAGAAGAGAGAGACCTCTATCCTCGTTCGCGTTCGCCGAGGACCCGACGAGTTCGCCGAGTTGCAGGCGTGTATTGTTCCCAACGATTCCTCCGGGAAGAAGCACTACGTACTCCGCTCCATCACTGATCCCAACTACGTCGTTGGGTTCTTGGATCGAACCGAAACCCAGTGTTTCCAACTCCAAGCTTCAAGGACCACCAGGATGGTAAATGCACTAACTAGGACGCGGTTACAGGATGGATTTGTCTCGTATCCATGGGAGAGGAGGATGCAGGAGTTACTATCAGTTCCCAATTCTAGCAATTTTCTTTCCATATTACTTCTTCCCAAAGTTTCAGATAGGACAGCTTCTCGCTACAATGATGTGGAGGACACTCTAGCCAGGGCAAATACATGGCTGAATGCAGCTCAAGCTTCAGGAGTCCCTATTGTCTTTATGAACGTCCAAACCGAGTCCCTACTCACTAAGATCTCCGGAGAGACAGCTTCTTCCACTGTAAACGCAGGATCATTATCTGACTTATCAAACCTTGCAAATGCAAGCCTTTATGGCTTTGAGGATTATCATGGTGTAGACATCGGTGTTGTTAGAGCAGTTCGGCTCTGGTATGCTCCGATCGGAGGAGAGTTCTCAATTGAGATAAAACTGAAAGAGGATGACACAAAGCTTGGTTTTGCCATTAGTCGTACAGAAGAGGGTTTTATTTTCATCTCAACAATTATTGATGATGGCCAAGAAAATGTACCAGCCACACGTTCTGGACTCAGCGATCTGTTTAAAGCAGCATCAGATACGTCAAGGTTGTTGGTAGTTTCTAGGCTCTCAAATCAGAGAGTCCTCCCATGGATGGTTTCTTCAACAGGAGCCATTCGGTGTTATGACACTGTTTCATTGAGCCAGAAACTCTCCTTGCATAGACACACCAAAGTTCCTATTCTCCTGCATGTCTTCCTTTGGGACCGAGCATTGGCCTCTTCAAGTGTAGAAAGCACGAGATTGAGTGCCTTGTCTCCCTCCGTGTTGCCATTACCATTACCCCACGAAGTTCAATTGGCACGCCATCCAAATGAGAACCAAATACAGCCATTGCCTCCTGAACGATCTGATCCAGGTGGTGATGTCAGCAGTGATGGTTCCCAGCCAATGCAGCTTGAGAGAGACACAGCTGGGGATCTCTCTTTCAgattccacaacttctccttgTCCAGCAACTGggtataa 1470 0.4748 MTMDRDRASQSSSDSPSRDTKVLSIECLKGSSKGDEWTGDMLQTGDIVEELRIGASPNALIRFKSPFKNGKNGVSKILQDSYKKRETSILVRVRRGPDEFAELQACIVPNDSSGKKHYVLRSITDPNYVVGFLDRTETQCFQLQASRTTRMVNALTRTRLQDGFVSYPWERRMQELLSVPNSSNFLSILLLPKVSDRTASRYNDVEDTLARANTWLNAAQASGVPIVFMNVQTESLLTKISGETASSTVNAGSLSDLSNLANASLYGFEDYHGVDIGVVRAVRLWYAPIGGEFSIEIKLKEDDTKLGFAISRTEEGFIFISTIIDDGQENVPATRSGLSDLFKAASDTSRLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRALASSSVESTRLSALSPSVLPLPLPHEVQLARHPNENQIQPLPPERSDPGGDVSSDGSQPMQLERDTAGDLSFRFHNFSLSSNWV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2710 489 PANTHER - 4 489 - -
Ssu3g2710 489 MobiDBLite consensus disorder prediction 441 467 - -
Ssu3g2710 489 PANTHER OS02G0717600 PROTEIN 4 489 - -
Ssu3g2710 489 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2710 489 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2710 Ssu-Chr3 81097001 81100381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2710 - - gmx:100788800 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2710 3 81097001 81100381 Ssu3g2710 3 81097001 81100381 ECH
Ssu8g0399 8 6386375 6390989 Ssu3g2710 3 81097001 81100381 PCT