Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2640 ATGGTCTTGCAGAGGAGGTTAGATTATGGATTTAATGGCTATCAGGCTCCGGCCATGCCCCGAGCTTCCCGATCAACTAGGAGGAGGGCTAAATTTCAAAGAGCAGAAGACAATCAAAAGTGTGCATTTGACTTATTGGCCACCGTAGCTGGTAAACTGTTGCAAGATAGAGAGAATCCAACCATGTCTAGTGATGCACCATCAGAAAAGGATCAGTGTGGATTTGTCAAAGAATGCCAGGACGTAAATAAACCATCCAAATCTGAGGTTTCTGATGAAGGAAGTTGTGACCAAAAAAGTTTCTCTCATCTTTCTtcacaaacaaacaataaaaattccTGTTTGAAAGAATTCCCACATCTTGCAATTGATGACCATGCAGGGGTTGCTTCTATAGTAACAAGTTCTAGTTGCTTAGAGAGGTTCATTGCAGAGAAATTGGTGGATGGCAATAGCCATTTCAAAATGGAAAATGTTGCTAGTGAAGTTAAATTAGATTCTTCTGGTTATCCAAAGAATAGCCATTTCAAGTCAGATGGCaataaaaggaaaggaaaggatgAGCTGCATAAATTTGAGAAGGTGCCAATTGGCAATGGGATTGAGATGTGCAGTTTTGAGGATCCGTTGGATGAAAATCCTCATGCGTTGAGCAGTTTAGGTCACAATGCCAAATTATCTGGATATAATGATAGGATTCCCTGTAGCTTGTTGTCCAAAGATTGTGACAATGTACCAGTAGTtagtagagatgatgatgaaaACTCTTCTGGGTGTACTCACCCTATTAATACTAAAACCAAGTCCTTTAGGCCAAAGACTTGTATGGGTGATAATAGAATAAGTGAAAGACTGGCTTCTAACTTTCAGAAAGTTgctgaaaaatcaaaagatgatACACATTCTAACAGTGATGGAGATTGGAAGCAAACTCACTTCAGTAAGAGGAACTGCAATAAACGCCAAAGTTCTCAGATGAATGTTCTTTTCAAAAAGAggaagttttttaattatagctCTGTTTCAAATTCTAATGGATTTATCACGAGTGGTGGCATTTATTATTCACCTAAGAATTGTATGAATCAGGATGCTTATGGTTCACCTCCTGGGATGCACAAAGACCCTGGAATATCATCCTTGGAAGCATGTCAACATCAGACATTAGGATGTAGAGGTTCTCATGTGAAGCTTAGGATCAAGTCATTTAGAGTGCCGGAGCTTTTTATAGAGGTTCCGGAAACTGCAACAATTGGGTCCTTGAAGAGGACAGTGATGGATGCAGTGACTGCTGTACTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAGAAAGTTAGGGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATCATAACCAGTTGGATGCTTTGGGTTTCACTCTGGAGCCTAATTCCTCACAAAGCCTACCGATTGTATGCGCTGCACATTCTCCCCATCCTAACACTGACATAACTCAGTCTGTAATAAGGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCACGGCAATTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGCCATTTTGAAAGTGACCATGATTCAGCACCTTGTATTAACGCATCTGTTGACAAAGGTATGAAGGATTCCAAAGAACTGGTTACTGTTCTTGAAATGGATAAGGAGGAACTAGCGATAGTACCTGGCCTCCAGAAGCCAAAGCGATCCGAGGTTGTACAGCGCCGAATACGTAGGCCATTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTAGAAAAACTAGGAACTGGAAGGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAAGCATCGGACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCATAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACGCATATTGGTCCCAGCAGCAGACGAAGCAACAGCACAAGCAGCATCCAGAAACTGAAACTGCCTTCTGCTTTAATGAGGGCCAGGGGTTGTCAGGTGGCCATGTGGATGTGGGTGTTTTGGTTTCTGACTTTTGTTAA 2133 0.4027 MVLQRRLDYGFNGYQAPAMPRASRSTRRRAKFQRAEDNQKCAFDLLATVAGKLLQDRENPTMSSDAPSEKDQCGFVKECQDVNKPSKSEVSDEGSCDQKSFSHLSSQTNNKNSCLKEFPHLAIDDHAGVASIVTSSSCLERFIAEKLVDGNSHFKMENVASEVKLDSSGYPKNSHFKSDGNKRKGKDELHKFEKVPIGNGIEMCSFEDPLDENPHALSSLGHNAKLSGYNDRIPCSLLSKDCDNVPVVSRDDDENSSGCTHPINTKTKSFRPKTCMGDNRISERLASNFQKVAEKSKDDTHSNSDGDWKQTHFSKRNCNKRQSSQMNVLFKKRKFFNYSSVSNSNGFITSGGIYYSPKNCMNQDAYGSPPGMHKDPGISSLEACQHQTLGCRGSHVKLRIKSFRVPELFIEVPETATIGSLKRTVMDAVTAVLGGELHIGVFLQGKKVRDDSKTLLQTGISHHNQLDALGFTLEPNSSQSLPIVCAAHSPHPNTDITQSVIRYPSSPAVIHQRIHGNSDMLPEHQVTSLGSHFESDHDSAPCINASVDKGMKDSKELVTVLEMDKEELAIVPGLQKPKRSEVVQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFDNAKHRTYVDLKDKWKTLVHTARISPQHRRGEPVPQELLDRVLVAHAYWSQQQTKQQHKQHPETETAFCFNEGQGLSGGHVDVGVLVSDFC 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2640 710 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 684 IPR031105 -
Ssu3g2640 710 SMART sant 587 640 IPR001005 -
Ssu3g2640 710 ProSiteProfiles Myb-like domain profile. 583 638 IPR001005 -
Ssu3g2640 710 SUPERFAMILY Ubiquitin-like 393 479 IPR029071 -
Ssu3g2640 710 MobiDBLite consensus disorder prediction 293 314 - -
Ssu3g2640 710 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 1 684 - -
Ssu3g2640 710 Gene3D - 577 680 - -
Ssu3g2640 710 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 584 642 IPR017930 -
Ssu3g2640 710 CDD SANT_TRF 589 639 - -
Ssu3g2640 710 MobiDBLite consensus disorder prediction 293 317 - -
Ssu3g2640 710 SUPERFAMILY Homeodomain-like 589 670 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2640 Ssu-Chr3 80005054 80009519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2640 - - gmx:100797436 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0451 8 7167749 7171585 Ssu3g2640 3 80005054 80009519 PCT