Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2595 ATGGAAGACCTGGACTCGGTGTTCATTTACCACGAGGGAGAACAAGAGTTGAGGCAGAAGCTTATGGATGCCACACTTGAACTCGAGACTATGAAAAATGTCAAAACGGAACTGTTCAATCTGTTGAAGATGGCTTACCAAGAGAGGGATGAAGCAAGGTGTCAGCTACATAAACTAATGAATCAGCTCACGCCCTCTAGTCCAACCCGTTTGCAAAACACGTTTGATACCCAAAGCCTTGTCATGTTCCCTTCTGCTAAAGCAAATTCAAGCATAACAGAATCTGACAATAGTCTCTCACACGGTTCCCCCCAAGTGGATTCCTTCTTTGACACTGTCTCTTCTCCAGAGTTTACAAACATCAATGCAGGTGACCCTATTAACAAAGTGAGTTATCTCAATCAGCATTTGGTCCAGGACTTCAATTTCTCAGCACCTCCTGCATTGATGGTTCCTTCAGAAAAGCCAGGGTCTGATGCTGCCACTGCAGTTATAGATTGTCTTGCCAAAGAAAGAGGTTTGCCTCAAAAGGGTAAACTCCTTCAAGCTGTGATAGATGCTGGTCCATTGCTTAAAACTTTGCTCCTTGCAGGGCCACTTCCTACGTGGAGAAACCCCCCTCCTTTCCAAAACATCAGAGTGCCACCTCTGGCCATCAAAAAGTGTGATGCCACTAGCATTGACCCTATTACTTTTGGAGAAAGTGGAAATTCACTTCTAAAACCCAAGCTTCCACCCTTGCATTCTTCAAATGCTCCCTCCACGTGTTCAGCTTCTGTGCTTAACTTTGCTGGTCAAACCACTGATTCAGGGAACAATCCATGGCAGCTGAATTCAACTTCTGGTGTCAGCATCCAAGTCCCGTCAAGGAAGCGGCAAAGGCATCAATGA 891 0.4545 MEDLDSVFIYHEGEQELRQKLMDATLELETMKNVKTELFNLLKMAYQERDEARCQLHKLMNQLTPSSPTRLQNTFDTQSLVMFPSAKANSSITESDNSLSHGSPQVDSFFDTVSSPEFTNINAGDPINKVSYLNQHLVQDFNFSAPPALMVPSEKPGSDAATAVIDCLAKERGLPQKGKLLQAVIDAGPLLKTLLLAGPLPTWRNPPPFQNIRVPPLAIKKCDATSIDPITFGESGNSLLKPKLPPLHSSNAPSTCSASVLNFAGQTTDSGNNPWQLNSTSGVSIQVPSRKRQRHQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2595 296 Pfam Protein of unknown function (DUF1635) 15 223 IPR012862 -
Ssu3g2595 296 MobiDBLite consensus disorder prediction 267 289 - -
Ssu3g2595 296 MobiDBLite consensus disorder prediction 267 296 - -
Ssu3g2595 296 Coils Coil 14 34 - -
Ssu3g2595 296 Coils Coil 42 62 - -
Ssu3g2595 296 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 296 - -
Ssu3g2595 296 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 1 296 IPR012862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2595 Ssu-Chr3 79351873 79354699 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2595 - - gmx:100776018 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2595 3 79351873 79354699 Ssu3g2595 3 79351873 79354699 ECH
Ssu8g0491 8 7736225 7738367 Ssu3g2595 3 79351873 79354699 PCT