Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2567 ATGACAATGGAATTTCCCTCTCCCAAGCTTTGTCTTACCACTTTCACTCTTAAACCTCTCTTCTTCGTCTTCATTTTACTCACATCAACCCATGCAAGAGCAACCCCTTCCTCAAGCCCAAACTTATTCCGAGAATACATTGGAGCCGAGTTCAACAACGTTAAATTCTCAGATGTCCCTATCAACCCAAGTGTCCAATTCCACTTCATTCTCTCCTTCGCCATTGACTATGACACGTCGTCTTCCCCTTCTCCCACCAACGGAAAGTTCAACATATTTTGGGACACCAACAACCTTAGCCCCACCCAAGTTTCCGCCATCAAGAGCAAGAATTCAAATGTCAAAGTAGCCCTTAGCCTTGGAGGGGATAGCGTTGGAGGTGGCTATGCTttcttcaacccatcttcaatTGATTCGTGGGTTTCCAATGCGGTTTCTTCACTCACAAGCATAATCAAAGAGTATAATTTAGACGGAATCGACATTGACTACGAGCATTTCAAGGCAGACCCTGACACCTTCACTGAGTGTGTTGGGAGGCTAATCAAAACTCTAAAATCTAATGGGGTCATCAAATTTGCTTCTATTGCCCCATTTGATGACAACCAAGTTCAAAGCCACTACTTGGCCTTGTGGAAGAGTTATGGGAACCTCATAGATTACGTTAACTTCCAATTTTATGCGTATGATAAAGGCACCAACGTGGACCAATTTATCGATTACTTCAATACACAAAGTTCAAATTACAACGGTGGGAAGGTGTTGGTGAGCTTCATTAGTGATGGGAGTGGTGGGTTGTCCCCGGATGGTGGGTTCTTCACGGCATGCCATACGCTAAAGAGTGAGCAAAAACTTCATGGTATCTTTGTGTGGTCTGCTGATGACTCCATGGCAAATGGTTTCCGCTATGAGAAGCAATCACAAGCTCTTTTAGCTATACCCtag 945 0.4317 MTMEFPSPKLCLTTFTLKPLFFVFILLTSTHARATPSSSPNLFREYIGAEFNNVKFSDVPINPSVQFHFILSFAIDYDTSSSPSPTNGKFNIFWDTNNLSPTQVSAIKSKNSNVKVALSLGGDSVGGGYAFFNPSSIDSWVSNAVSSLTSIIKEYNLDGIDIDYEHFKADPDTFTECVGRLIKTLKSNGVIKFASIAPFDDNQVQSHYLALWKSYGNLIDYVNFQFYAYDKGTNVDQFIDYFNTQSSNYNGGKVLVSFISDGSGGLSPDGGFFTACHTLKSEQKLHGIFVWSADDSMANGFRYEKQSQALLAIP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2567 314 PANTHER CHITINASE 2-LIKE 21 312 - -
Ssu3g2567 314 SUPERFAMILY (Trans)glycosidases 41 306 IPR017853 -
Ssu3g2567 314 Gene3D Glycosidases 40 313 - -
Ssu3g2567 314 Pfam Glycosyl hydrolases family 18 68 232 IPR001223 GO:0005975
Ssu3g2567 314 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 157 165 IPR001579 GO:0004553|GO:0005975
Ssu3g2567 314 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 40 308 IPR001223 GO:0005975
Ssu3g2567 314 PRINTS 2-S globulin family signature 274 293 IPR000677 -
Ssu3g2567 314 PRINTS 2-S globulin family signature 104 122 IPR000677 -
Ssu3g2567 314 PRINTS 2-S globulin family signature 40 53 IPR000677 -
Ssu3g2567 314 PRINTS 2-S globulin family signature 87 102 IPR000677 -
Ssu3g2567 314 PANTHER 2, PUTATIVE, EXPRESSED-RELATED 21 312 - -
Ssu3g2567 314 CDD GH18_narbonin 42 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2567 Ssu-Chr3 78630077 78631021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2567 - - gmx:100795238 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2567 3 78630077 78631021 Ssu3g2567 3 78630077 78631021 ECH
Ssu8g0512 8 8085617 8086420 Ssu3g2567 3 78630077 78631021 PCT