Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2482 ATGGCGAACGACACTGGTTCCGGTCGCGTCACCGAGAAAGGACCAACTACGCGATCTTCTAGAGAGACATTGTTGAAGAACGTGGTTGCGAGCGCTTCCACCACTAATCCGAATCGCAAGTCGGAGCGACTCGAGAAGAGGACACCGCCATCGCTCGCAGTTAGAATGGATCAGAAGAAGACGAAGATGCCGAGTCCTTTGAGGAGATCTGAGAGAACTAGGAACGCTTCTCCTTCTTCGGATCCTTCGGCTTCTAAGAGTTCGGGTTCGAAGACGCGACCGAAGAAGCATTGCACTGGGAAACAGTTGGCGTTTGAAGCTAGCGATGCAAGCGAGGACGACGAGGATGAGGAACGTGGCGTGGACGCTTCTTTGAGACCTAGAATTAAGAGGATGAATGCCCGCGAGTATGTTGCTATGTTTGGTAAATCAAAGGGAGATTGCCATGAGAAGACAAATGGGATGGATAGGTCGACTCAGGAAGATGATGACGGGGGAGGGGGCAAGATTGATGGGTGCCTTAAAGGGAATTGTTTAGATTCTGCCAAGGATGATAAGGATGTTCTACCACCTGAAGATGCTACTGACAAAGAGATGAGAGCTAAGCCTAAGTTGAGTGGGCATGTGAAAGAACTAATAGAAAATAATGTGACTGTAAATTCATTGGTACTTTCTAATGCTGCAACTTGTGAGCCCAGTGGGGCACCTGAAAGGGTTCAGTCTGATTCCTGCAAAGAGGAGACATCACAAATGTTAGGGTCAAGGGATTCCATATCAGATGAAAATTTGATTAGGAAGTGTGTTGAGCTTGATAAGGGTGAAAAATCGATATCTTCTAAGAGAAAGAGAACTATGGTGGACATGCATTCAGATGCTTCTGCAATGTTGGTTGACAATGACAGCAACTTGATTGAGGATGCTCGCCCTTCAAGGATATGCAGCAATGTTGTAGAGACCAGCGGGTCATGTTCCAAAAGGATAAgGCGGATTTCCTTATCAGATGCGAAAAGGGATTGGAGGAAATCTACCAATAATGTTGATCAGccttcttcaaaatctaatgGTGAAAAATTATCTACTACGAACAAGGAAGGAAATTCTGGAGGTCCAGTGGACTCAGAGAGACCTGAAGGGAACGCTGTTGAAACTGAGAAAATAAGGAAACAGCAGAGGAGCTTACATCTGCTACTGAAGCCAGAGATAGCAAAGCTCTGTGAAATTCTTCGTCTCCCTGACAATGTCAAGAGTATGGTTGAAAATTGTCTTGAATATACTATGAACAATTATCAGATCTGTACAGAACCAGTGTCAATATTGCAGGCTTTTCAACTATCTCTGTGTTGGACTGCTGCTTCTTTGCTAAATCACAAACTTGACTTTGAAGCTTTGCTCGTGCTTGCAAAGCAGCACTTGAATTTTGACTGCAAGAAAGAAGTGGTGGATGAAATCAATTCAAGGCTCTGGGATCTGAAGGAACAATTTTTATTACTCACAGGAAACTCTAATGTTGCTGGCTATCCAAAAGCTTCTGAATTATCAAATGGGGTTTATTCATATATAGAAGTGACACCAGAGGTTGAATTGgtaaaaattgataattctaaaaatattaaaaatgttcagAGGCGTAAAAGCCAGTGGAACAAGCTACTTCTGATGCAACTGGAAGAGAAgcaaaagttgaaaaaagataTTGAGAATGAAAATGCTGAATTTCGGAGAAGGTACCGGATAGAGTGGGCAGCTATTCGAACATGTTCTCCCAATGATGTGTTGAGAGCAGAAAATCTCCGGGTTTTCAATAgtgaatatattaaaagaaatagagaattgGATAGGCAGCATGAAATACGTCTCAAGGATCTTGAGGCCAAGCAATCAAAAACAAGGCTGATGTTCCAGGAGTCTTCAGCACCCGATGAATTGTTAAACCCAGTTGCTTCAAACGAACTTGGTACTAAGGATGAATCCTTGCAGACTTGTGATCCAGCCCAGTATCATAATACTCTAAAAGCCCTTGTGTCTGATCATGTTGCCGAAGGAAAGGGTTTCAAAGATATAGTTGAAGTCATGACAAGGACTGGAACTGGGGTTGGATTATCTGAAGCTGCTGACATCAATGCCTCTGTAGTTGTACCATGCAGTAGCCCAGTTGAACTGCAAATTCCTCTGGTCAAACGTGCTGATGCTAATGAGATGGATGTAGTGGCTTCAAAAGAGGGACCAGTATCTGGAAATAAGTGCAATGATATTGctgaaaatgaatgtgacagTCAAGGAAATATTATCTCTAAGCATTCCGAATCCAGAGAACAATGTTCTGATGGAGCTATTAGCATGCCAGACAAAGGGGAAGGGTGTGTAAATTTTAGTTGTGAATCTCGTAATTATTTTGGGCAGGATGCTATAACACGGGTTCTGCCTTCATCTAATGAAGAGATTTGTGATGGGGAAACATTAGATGTTCCCAGTGGAGGGCTGGCTCCTACAGTGTGTAACACCAGCCGTTCAAATGATGATCGTGTTGAAATTCCTTCTAGGCAAGGGGAACTTGATGGCACTATACTGAGCAAGCCTGTTTGTGGTTCATCAATAGAAGTCGAGGCTAATGGTTCCAATAATGGTGCAAAGAATATGGCCACCTTGAATTCCCAATCATCTGAAGAACATATCCCAAGTGTAAATAACATGTTCACACCAAATTGTGAGAATGCTGCACAAATCCATGAGGCTAAGGACAATTATGGTTCAAATAATGCTGAAACTCTGAACTCACCTTTGTCTGATGAAAGAATTTCCTCCTGGAATTCAAAATCACCTCAAGACCATGTCCATAATGAAAATGTCATGTGCATGCTAAATTGTGAGAATTTTGCACAGATCCATGAGGGTGATGATGGCAATGGTTCAAATAATGTCATTCTGAATTCACCTTTGATTGATGAGAGAAATGCTGATGGTACCATAGTATTAAATAGAGATGCACATGTGGGAATGCTTGAGACTGTCAATTTCACTCCTTCATACACAGAGCAAATATCTGGAGGTACAGTAGATGTCTCAGTTCTAGATAATGTGTTGTCAAGACCATGTGGAGCTGATAGTCCCAGTAATAGCTCTGATGCTAGTGCTATTCTTTCAAATCAACCTTCTTTAGAGAAACAAAATCCAGATGGAGTCTCATCAAGTATACCTTCTGGACAAATTCCAGTTGAAGTGTCAGAAACTAGTCATGAGAGGGCCACAGTAAACGTATTAGATGGGGAGGAAGCTGTGGGAATGCCTGGCACAGTCAATTGTACTGATTATCCTGGGAATGTAACTCTGAATTCTTCATCCATTGATCAAATATCTGATGGAGGTCCAGTATTAGATGGAGATTTATCATCAGGGCCTTGTACTGCTAGCTCAAGCAATGGTCAGACCCTACCTGGTGAACAAACTCCTGTCTTAGTGCCAGAAAATAGCCATGAAGAGGTTGAGTGTCAATTAACAGACAGTGTGGTGGTGGATAAAAGTACCACACTGGACCAGCAGGAAGGAGTATGTAGAATCATGACAGAAAACAGTTTGTCCCAGGAAACTCCAGTATCTAGACCAGTTGATATCATGCAGCCTCTAGAACAAGTGCAGCTGTTATCATCCGTAGAATCTCCACCTGACCGGGATACTGCTAGGGAAATGCAGAACACTTTGGTATCTAGTCTTGTTGATATTGTACCAGCTAATCAATCGATTAATGATTCACCAGTCACAGAGCCTCCACAGCAGGAGGGGCAATTACCTTTTGCAGGTTTCCTTTCTTCCAACCAGGACCTATCTAACATGCCTTTGGTGAATGGAACTGAAGACCAGCCATCCAATGAACATGATCTCCCCAACCACATTCCTAAGACatcaattgaaattcaaaatgaagCTGTTGTGCAACATGCCTCAAATTCGGACCATCAGGAAGGAGTATGTAGAACTATGACAGAAAACAGTTTGTCCTGGGAGACTCCAGTATCTAGACCAGTTGTTCTCGTAGAGCCTCTAGAACAAGTGCAGCCATTATCATCTGTAGAGTCTCCACCTGACCGGGATACTGCTAGAGAACTGCAGAACACTTTGGTATCTAGTCCTGTTGATACTACACCAGCTTATCAATCCATTAATGATTCACTGGTAATGGAGCCTCCGGAGCAGGAGGGGCAATTACCTTCTGCAGGTTTCCTTTCTTCCAACCAGGACCTATCTAACTTGCCTTTGGTGACTGAAAGTGAAGACCAGCTATCCAATGAAGATGTTCTCCTCAACCACATTCCTGAGACATCAATTGAGATTCAAAATCACACTATTGTGCAACGTGCCTCAAATTTGGAACTTGACTCATGTTCTCGTCAAGTTGTACATCCAGCCTCAAATATGGACCTTGATTCACTTCTGCCTGGTGGAGTCAGACTACAGACTTTGGACACAAGAAATTTGTCAACTCTCACAGAGATTAATAATCATCCTATACAACCTGCAAGCCAATCAGCTTCCAGGATTATTCCACATTTGTGCTATGATccacttaaaaatgaattggaaAGGCTACATAGACTGACAGAGCAAAATATGAAAGACTATGAAAATAAGAAATTTCAGTTGAAATGTGATTATGAGAAGGAATGCGAGGAACTTTGCAGGaagtttgaaattaaacatAAGGAGATTGTGGTTGAATATCAGAAAATAAGGAAGAACCTGGATACACAATTTAACATAGTTCTTGCAAATAAGATATTGGCTGAGGCTTTTAGGGCTAAATCTATGGATCTTAGAGTATCTGGTGCATCAGGAATGAAGCAAGATACAAGTTTTGCGCAGCAATTATTTCAGCTTGCAAGTCAGCAAAATGCTACTCGGCCCTCTCTGGTTGCTAGTCCATCTTCTTGTGGGCCTCCTGCAGCCAGCTTGCAGAGTTCCTACGCTACAACTACCTCTCAGACTCTGGTACCACCAATACAGGCCACTTACAGTACATCAGGAACTTTCTCCAGTGTTCCTGCAAGACCACCTCATATCAACTCCATCTCATCAGCCTTGGGAAATCTTCAAACTGGTGTGGAGATACGTGCCCCTGCACCACATCTCCAGCCTTGTAGACCCTCAACATCCGTCCCAGCCTCCAGTCTCTGTACAGTTCCACATGGGAGGCCAAGTCTGCCTGCACCTGGTAATATTCCTGTAACTTCTCCCCCATTTTCTCACTGGACACCCCGACCAATGCCAGCAACCTTTCAGTCTGTTCCTCATAGGGGGCATTGGCCTGTGAGTACAGATGGGTTATCCACACCTAATTTATCTGCCATGAATTCTCATTCTGATGCTAACAGTCAACTTAGTATAAATTTGCCAAATGTTCGGCCACACATGTCAGATTTGGCTTCATTGAACCTATCGAAATTTGGCACAAGTAGCACACCGGCTAACTCGGCTCACCAAGCTACATCACCTGATGTAGTCTGTTTATCAGATGATGAATGA 5514 0.42 MANDTGSGRVTEKGPTTRSSRETLLKNVVASASTTNPNRKSERLEKRTPPSLAVRMDQKKTKMPSPLRRSERTRNASPSSDPSASKSSGSKTRPKKHCTGKQLAFEASDASEDDEDEERGVDASLRPRIKRMNAREYVAMFGKSKGDCHEKTNGMDRSTQEDDDGGGGKIDGCLKGNCLDSAKDDKDVLPPEDATDKEMRAKPKLSGHVKELIENNVTVNSLVLSNAATCEPSGAPERVQSDSCKEETSQMLGSRDSISDENLIRKCVELDKGEKSISSKRKRTMVDMHSDASAMLVDNDSNLIEDARPSRICSNVVETSGSCSKRIRRISLSDAKRDWRKSTNNVDQPSSKSNGEKLSTTNKEGNSGGPVDSERPEGNAVETEKIRKQQRSLHLLLKPEIAKLCEILRLPDNVKSMVENCLEYTMNNYQICTEPVSILQAFQLSLCWTAASLLNHKLDFEALLVLAKQHLNFDCKKEVVDEINSRLWDLKEQFLLLTGNSNVAGYPKASELSNGVYSYIEVTPEVELVKIDNSKNIKNVQRRKSQWNKLLLMQLEEKQKLKKDIENENAEFRRRYRIEWAAIRTCSPNDVLRAENLRVFNSEYIKRNRELDRQHEIRLKDLEAKQSKTRLMFQESSAPDELLNPVASNELGTKDESLQTCDPAQYHNTLKALVSDHVAEGKGFKDIVEVMTRTGTGVGLSEAADINASVVVPCSSPVELQIPLVKRADANEMDVVASKEGPVSGNKCNDIAENECDSQGNIISKHSESREQCSDGAISMPDKGEGCVNFSCESRNYFGQDAITRVLPSSNEEICDGETLDVPSGGLAPTVCNTSRSNDDRVEIPSRQGELDGTILSKPVCGSSIEVEANGSNNGAKNMATLNSQSSEEHIPSVNNMFTPNCENAAQIHEAKDNYGSNNAETLNSPLSDERISSWNSKSPQDHVHNENVMCMLNCENFAQIHEGDDGNGSNNVILNSPLIDERNADGTIVLNRDAHVGMLETVNFTPSYTEQISGGTVDVSVLDNVLSRPCGADSPSNSSDASAILSNQPSLEKQNPDGVSSSIPSGQIPVEVSETSHERATVNVLDGEEAVGMPGTVNCTDYPGNVTLNSSSIDQISDGGPVLDGDLSSGPCTASSSNGQTLPGEQTPVLVPENSHEEVECQLTDSVVVDKSTTLDQQEGVCRIMTENSLSQETPVSRPVDIMQPLEQVQLLSSVESPPDRDTAREMQNTLVSSLVDIVPANQSINDSPVTEPPQQEGQLPFAGFLSSNQDLSNMPLVNGTEDQPSNEHDLPNHIPKTSIEIQNEAVVQHASNSDHQEGVCRTMTENSLSWETPVSRPVVLVEPLEQVQPLSSVESPPDRDTARELQNTLVSSPVDTTPAYQSINDSLVMEPPEQEGQLPSAGFLSSNQDLSNLPLVTESEDQLSNEDVLLNHIPETSIEIQNHTIVQRASNLELDSCSRQVVHPASNMDLDSLLPGGVRLQTLDTRNLSTLTEINNHPIQPASQSASRIIPHLCYDPLKNELERLHRLTEQNMKDYENKKFQLKCDYEKECEELCRKFEIKHKEIVVEYQKIRKNLDTQFNIVLANKILAEAFRAKSMDLRVSGASGMKQDTSFAQQLFQLASQQNATRPSLVASPSSCGPPAASLQSSYATTTSQTLVPPIQATYSTSGTFSSVPARPPHINSISSALGNLQTGVEIRAPAPHLQPCRPSTSVPASSLCTVPHGRPSLPAPGNIPVTSPPFSHWTPRPMPATFQSVPHRGHWPVSTDGLSTPNLSAMNSHSDANSQLSINLPNVRPHMSDLASLNLSKFGTSSTPANSAHQATSPDVVCLSDDE 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2482 1837 Coils Coil 1521 1541 - -
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 1 149 IPR039322 GO:0031507
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 811 1225 IPR039322 GO:0031507
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 1814 1828 - -
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 150 790 IPR039322 GO:0031507
Ssu3g2482 1837 Gene3D - 1517 1598 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 145 169 - -
Ssu3g2482 1837 Coils Coil 548 575 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 336 385 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 1 38 - -
Ssu3g2482 1837 PANTHER - 1368 1837 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 145 207 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 344 368 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 39 53 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 1814 1837 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 1 128 - -
Ssu3g2482 1837 PANTHER - 1228 1314 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 1050 1077 - -
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 1368 1837 IPR039322 GO:0031507
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 1228 1314 IPR039322 GO:0031507
Ssu3g2482 1837 PANTHER HELICASE PROTEIN MOM1 1315 1364 IPR039322 GO:0031507
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 178 207 - -
Ssu3g2482 1837 PANTHER - 1 149 - -
Ssu3g2482 1837 PANTHER - 811 1225 - -
Ssu3g2482 1837 PANTHER - 1315 1364 - -
Ssu3g2482 1837 PANTHER - 150 790 - -
Ssu3g2482 1837 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2482 Ssu-Chr3 76831064 76843543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2482 - - vun:114170579 2200.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0586 8 9446031 9447412 Ssu3g2482 3 76831064 76843543 PCT