Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2452 ATGGCATCATCACCAATCCTCTCCAAAGTCTCTCTGTCTCTTGTGTTGCTCTTCTTCGTGTCACTTTCTTCTTCCTATGCAACCTCTCGCCTCACCCATGACCGTGCCTACCCACCACAATCACAAGCAGAAAAGCTCATAAGAAGCCTTAACCTATTCCCAAAGGACCCAGTTAACATTGTTAAAGGTGACCATGCTAGTTTTGTCCCAGGAAAGATCGTGGAGAAGAAGTTCTCGTTTCTTGGTGATTCTGGGCCTTCTATTGAAGACCTTGGTCACCATGCAGGCTACTACTCACTTCCTCATTCCAATGCTGCAAGGatgttctactttttttttgaatcacGAAACAATAAGGATGATCCTGTTGTCATATGGTTGACTGGGGGACCAGGGTGCGGCAGTGAAATAGCTTTGTTTTACGAGAATGGCCCTTTTCATATTGCCAATAACTTGTCTCTTACATGGAATGATTACGGTTGGGACCAGgcatcaaatattttatttgttgaccAACCTACGGGGACAGGGTTTAGTTACTCTTCTGATGATAGTGACATTCGTCATGATGAAGCGGGCGTTAGCAATGATTTATATGACTTCTTGCagGAATTTTTCAAGGCGCATCCTGATTTCGTTAAGAATGACTTTTATATTACTGGAGAATCATACGCTGGACACTATATTCCGGCTCTTGCATCCCGGGTTAATCAAGGAAATAAACAAAACCAAGGAATTCATATAAACCTTAAGGGTTTTTCTATTGGTAATGGGTTAACAAATCCTGCAATTCAATACCAAGCATACGCAGATTTTGCATTAGACAACGGAATAATTACAAAGGTTGATTACGATGATATCAGCAAGTCAATCCCGGGCTGTGAACAAGCTGCTAAAACTTGCGAATCTCAAGGTGGACAAAGCTGCGAGACTGCGCGTGATACTTGTGAAGACATATTCAGAAGTATCTTGTCCATTGCTGGTGACATTAATTACTATGACATCAGAAAGAAATGTGTGGGAGATTTGTGCTATGACTTCAAAAGCGTGGAGACGTTGTTAAATCAGCAGAATGTGAAGAGTGCTTTGGGTGTGGGGAGTGACTTGGAGTTTGTTTCATGCAGTACATCAGTGTATGATGCTATGGTGCAAGATTGGATGAGAAACCTGGAAGTAGGGATTCCTGCTCTTCTTGAGGATGGAATCAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCATGCCATGGTGTGGTCAGGCCAAAAGACTTTTGAAACATCTCCTACGGTGAaatttgtggttgatggtgcAGAAGCAGGGTCTTTGAATAGCTATGGACCTCTCTCTTTCCTCAAGGTACATGGGGCTGGGCACATGGTCCCTATGGATCAACCAAAAGCTGCACTTCAAATGTTGAAAAGCTGGATGGGAGGGCAACTTACCGAAACAGAAGGAGATAATTAA 1497 0.4142 MASSPILSKVSLSLVLLFFVSLSSSYATSRLTHDRAYPPQSQAEKLIRSLNLFPKDPVNIVKGDHASFVPGKIVEKKFSFLGDSGPSIEDLGHHAGYYSLPHSNAARMFYFFFESRNNKDDPVVIWLTGGPGCGSEIALFYENGPFHIANNLSLTWNDYGWDQASNILFVDQPTGTGFSYSSDDSDIRHDEAGVSNDLYDFLQEFFKAHPDFVKNDFYITGESYAGHYIPALASRVNQGNKQNQGIHINLKGFSIGNGLTNPAIQYQAYADFALDNGIITKVDYDDISKSIPGCEQAAKTCESQGGQSCETARDTCEDIFRSILSIAGDINYYDIRKKCVGDLCYDFKSVETLLNQQNVKSALGVGSDLEFVSCSTSVYDAMVQDWMRNLEVGIPALLEDGIKLLVYAGEEDLICNWLGNSRWVHAMVWSGQKTFETSPTVKFVVDGAEAGSLNSYGPLSFLKVHGAGHMVPMDQPKAALQMLKSWMGGQLTETEGDN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2452 498 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Ssu3g2452 498 Gene3D alpha/beta hydrolase 74 497 IPR029058 -
Ssu3g2452 498 Pfam Serine carboxypeptidase 91 488 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 491 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 PANTHER SERINE CARBOXYPEPTIDASE 3 31 491 - -
Ssu3g2452 498 ProSitePatterns Serine carboxypeptidases, histidine active site. 459 476 IPR033124 GO:0004185
Ssu3g2452 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Ssu3g2452 498 SUPERFAMILY alpha/beta-Hydrolases 92 490 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2452 Ssu-Chr3 76207193 76209758 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2452 K16298 - gmx:100798795 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2452 3 76207193 76209758 Ssu3g2452 3 76207193 76209758 ECH
Ssu8g0614 8 10038799 10042229 Ssu3g2452 3 76207193 76209758 PCT