Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2451 ATGACATCGGCGTCATCACCAACCCTCTCCAAAGTTTCTCAGTCTCTGGTGTTTCTTTTCTTCGTGTCACTTTTTTCTTCCCATGCAACTTCTCGCCTCACCCATGACCGTGCCTACTCCCCACAATCACAAGCAGAAAAGCTCATAAGAAGCCTTAATCTATTCCCAAAGGACCCAGTTAACATTGTTAGAGGTGACCATGCTGATTTTGTCCCAGGAAAGATCGTGGAGAAGAAGTTCTCGTTTCTTGGTGATTCTGGGCCTCCTGTTGAAGACCTTGGTCACCATGCAGGCTACTATTCACTTCCTCATACCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCACGAAACAGTAAGGATGATCCTGTTGTCATATGGTTGACTGGGGGACCAGGGTGCGGCAGTGAAATAGCTTTGTTTTACGAGAATGGCCCTTTTCATATTGCCAATAACTTGTCTCTTACATGGAATGATTACGGTTGGGACCAGgcatcaaatattttatttgttgaccAACCTACGGGGACAGGGTTTAGTTACTCCTCTGATGATAGTGACATTCGTCATGATGAAGCGGGCGTTAGCAATGATTTATATGACTTCTTACAGGAATTTTTCAAGGCGCATCCTGATTTCGTTAAGAATGACTTTTATATTACTGGAGAATCATACGCTGGACACTATATTCCGGCCCTTGCATCCCGGGTTAATCGAggaaataaacaaactcaaggaATTCATATAAACCTTAAGGGTTTTGCTATTGGTAATGGGTTAACAAATCCTGCAATTCAATACCAAGCATACCCAGATTTTGCATTAGACAAcggaataattaaaaaggatgaTTACGATCATATCAGCAAGTTAATCCCAGCCTGTGAGCAAGCTACTAGAACTTGCGAAACCAAAGGTGGACAAAGTTGCGAGATTTCACTTTATACTTGTCGAGacatattagatatgatattgATCATTGCTGGCGACATTAATTACTTTGACATCAGAAAGAAATGTGTGGGAGATTTGTGCTATGACTTCCAAAACGTGGAGAGGTTGTTAAACCTGAAGAAAGTGAAGAGTGCTTTAGGTGTGGCGAACGACTTGGAGTTTGTTTCATGCAATAAATCAGTGTATGATGATATGTTGCAAGATAGGATGAGAAACTTGGAAGTGGGGATTCCTGCTCTTCTTGAGGAGGGAATCAAGATGCTTGTGTATGCAGGGGATAAAGATCTCCTTTGCAATTGGCTTGGGAATTCAAGGTGGGTTCATGCCATGGTGTGGTCAGGCCAAAAGGCGTTTGGAACATCTCCTACGGTGAaatttgtggttgatggtgcAGAAGCAGGGTCTTTGAACAGCTATGGACCTCTCTCTTTCCTCAAGGTACATGAGGCTGGGCACTTGGTCCCTATGGATCAACCAAAAGTTGCACTTCAGATGTTTAAAAGCTGGATGGGAGGGAAATTGACCGAAACAGAAGGAGATAATTAA 1503 0.4032 MTSASSPTLSKVSQSLVFLFFVSLFSSHATSRLTHDRAYSPQSQAEKLIRSLNLFPKDPVNIVRGDHADFVPGKIVEKKFSFLGDSGPPVEDLGHHAGYYSLPHTKAARMFYFFFESRNSKDDPVVIWLTGGPGCGSEIALFYENGPFHIANNLSLTWNDYGWDQASNILFVDQPTGTGFSYSSDDSDIRHDEAGVSNDLYDFLQEFFKAHPDFVKNDFYITGESYAGHYIPALASRVNRGNKQTQGIHINLKGFAIGNGLTNPAIQYQAYPDFALDNGIIKKDDYDHISKLIPACEQATRTCETKGGQSCEISLYTCRDILDMILIIAGDINYFDIRKKCVGDLCYDFQNVERLLNLKKVKSALGVANDLEFVSCNKSVYDDMLQDRMRNLEVGIPALLEEGIKMLVYAGDKDLLCNWLGNSRWVHAMVWSGQKAFGTSPTVKFVVDGAEAGSLNSYGPLSFLKVHEAGHLVPMDQPKVALQMFKSWMGGKLTETEGDN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2451 500 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 493 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 Pfam Serine carboxypeptidase 92 490 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Ssu3g2451 500 SUPERFAMILY alpha/beta-Hydrolases 93 492 IPR029058 -
Ssu3g2451 500 Gene3D alpha/beta hydrolase 76 499 IPR029058 -
Ssu3g2451 500 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Ssu3g2451 500 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED 37 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2451 Ssu-Chr3 76183720 76186887 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2451 K16298 - gmx:100798795 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2451 3 76183720 76186887 Ssu8g0614 8 10038799 10042229 PCT