Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2446 atggcTCAGCAGAAAAGACCCCCAAATAACAGGGGGTACTATGTTAAGATGAAGCTCCTTCACAAACATGGCAGACCTCAGCAAGATAAAAACTGCTTCTATAGATACTACAAATGGGTCCTCTGgctttctctctccctctatttcttctcttcctACCTCATCAGCAACAACCAAGCCAAACCACCGTCTCACGTCTCCAGAGCACTCATCGAATCAAACCACACCACATCTCCACCTCAAGCTCTCGATGCTCAAGGGTCGCTGAAGAACCTGAAGGTGTTTGTGTACGACCTTCCTCCGAAGTACAACACGGATTGGTTGGCGAACGAGAGGTGCAGCAAACATTTGTTTGCGTCGGAGGTTGCCATTCACAGGGCCTTATTGACCAGCGACGTTCGCACGTTTGACCCTTACGAAGCTGACTTTTTCTTCGTCCCCGTTTACGTCTCTTGCAACTTCAGCACCGTCAACGGCTTCCCCGCGATTGGCCACGCGCGCTCGCTCATCGCGTCCGCGGTCAGACTCGTCTCCTCGGAGTACCCGTTCTGGAACCGGAGCAGAGGCTCCGACCACGTCTTTGTCGCTTCGCACGATTTCGGCGCTTGTTTCCACACCCTGGAGGACGTGGCGATGGCTGATGGCGTGCCAGAGATTATGAGGAACTCGATCGTGTTGCAGACGTTTGGCGTCGCGTACAATCACCCTTGCCAGAAGGTCGAGCACGTGGTGATTCCGCCGTACGTTTCGCCGGAAAGCGTACGGGACACGATGGAGAACTCTCCGGCGAACGGACGGCGAGATATTTGGGTTTTCTTCCGAGGGAAAATGGAAGTTCATCCTAAGAACGTTAGCGGACGATTTTACAGCAAGAAAGTACGGACGGTGATATGGCGGAAGTTTAACGGTGATCGGAGGTTTTACCTGCAGAGGCACCGGTTTGCCGGTTACCAGTCAGAGATTGCACGTTCAGTGTTTTGTCTGTGTCCTTTGGGGTGGGCCCCGTGGAGTCCGAGGCTGGTTGAGTCCGTTGCATTGGGTTGCGTGCCGGTTGTTATAGCGGACGGTATCCGGTTGCCGTTTGTCTCCGCCGTGAAGTGGTCGGGGATATCGGTCACGGTGGCGGAGAGGGACGTGGGGAGGCTGGCGGAGATACTCGAGCGCGTGGCGGCGACAAACCTCAGCACCATTCAGAGGAACCTCTGGGACCCCGCGACGAGGAGGGCCCTACTTTTCAACAGCCAGGTCCAGGAAGGGGATGCCACGTGGCAGGTCCTGCGGGCGTTGAGTGAAAAGCTTGATAGGTCCTATAGGGGCTCGAGGCTTTCACGCCAATTGGATTTTGACACGTAG 1353 0.5381 MAQQKRPPNNRGYYVKMKLLHKHGRPQQDKNCFYRYYKWVLWLSLSLYFFSSYLISNNQAKPPSHVSRALIESNHTTSPPQALDAQGSLKNLKVFVYDLPPKYNTDWLANERCSKHLFASEVAIHRALLTSDVRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLIASAVRLVSSEYPFWNRSRGSDHVFVASHDFGACFHTLEDVAMADGVPEIMRNSIVLQTFGVAYNHPCQKVEHVVIPPYVSPESVRDTMENSPANGRRDIWVFFRGKMEVHPKNVSGRFYSKKVRTVIWRKFNGDRRFYLQRHRFAGYQSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVVIADGIRLPFVSAVKWSGISVTVAERDVGRLAEILERVAATNLSTIQRNLWDPATRRALLFNSQVQEGDATWQVLRALSEKLDRSYRGSRLSRQLDFDT 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2446 450 Pfam Exostosin family 90 388 IPR040911 -
Ssu3g2446 450 PANTHER GLUCURONOSYLTRANSFERASE, PUTATIVE-RELATED 26 438 - -
Ssu3g2446 450 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 26 438 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2446 Ssu-Chr3 76119521 76121550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2446 K20889 - gmx:100818569 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2446 3 76119521 76121550 Ssu3g2446 3 76119521 76121550 ECH
Ssu8g0616 8 10077678 10078846 Ssu3g2446 3 76119521 76121550 PCT