Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2409 ATGCAGCCTTGCCAAACCACTACACTGTATGCACCAGATTCAAAGCAAAAGACTAAGGTCAGATTATCAGTTCCCAAAACTGTAACCATCTTCAGAGTCTGCTTTCTCTGTGTGTCTTTTTGCATGAACAAGAAGCTCATTGCTGAAGAGAAAAAATTGTCAAGTATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTTCTTCTTGCTGTGGTGCTCAATGTGACTAATGCGCAGCTTCTGGTACCTGCATTGTTCATATTTGGGGACTCAGTTGTTGATGTGGGCAATAATAACCAccaatttactattattaaagCAAACTTCCCTCCTTATGGAAGAGACTTTGAGAATCACAATCCAACAGGAAGGTTCTGCAATGGAAAACTTGCCACAGACTTCACTgCTGAAACCCTTGGATTTACCTCTTATCCACCAGCTTACCTCAACTTAAAGACCAAAGGAAAGAACCTCTTGAATGGTGCCAATTTTGCCTCAGCTGCTTCTGGTTACTTTGATTCCACAGCCAAACTATatAATGCAATTCCATTGAGCCGGCAGCTGGAATACTACAAGGAGTGCCAGAACAAATTGGTTGAAGCAGCAGGGCAATCAAGTGCTTCATCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTATTACATAAATCCTTTGCTGAACAAGGTTTACACAACTGATCAATTCTCAGACATGCTCTTGCGATGCTATTCCAATTTCATCCAGAATTTATATGCACTGGGAGCAAGGAGGATTGGTGTGACATCATTACCTCCAATAGGTTGCCTGCCTGCAACCATCACTCTCTTTGGCTCTCATAGCAACGAATGTGTGGCCAGTTTAAACAGTGATGCAGTTAACTTCAATGAAAAGCTCAACACCACATCTCAGAACTTACAAAATATGCTTCCAGGCCTCAATTTGGTCGTCCTTGATATCTACCAACCTCTCTATGACTTAGTCACCAAGCCTTTTGAAAATGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGGTTGATAGAGACATCTATTTTGTGCAATAAGAAGTCCATAGGAACATGTGCCAATGCGTCTGAGTATGTTTTCTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCGGATGATTTGATTGCTGCTGGCATCTCTCTTATATCCTAA 1218 0.4105 MQPCQTTTLYAPDSKQKTKVRLSVPKTVTIFRVCFLCVSFCMNKKLIAEEKKLSSMGYSRSFLASFLLAVVLNVTNAQLLVPALFIFGDSVVDVGNNNHQFTIIKANFPPYGRDFENHNPTGRFCNGKLATDFTAETLGFTSYPPAYLNLKTKGKNLLNGANFASAASGYFDSTAKLYNAIPLSRQLEYYKECQNKLVEAAGQSSASSIISDAIYLISAGTSDFVQNYYINPLLNKVYTTDQFSDMLLRCYSNFIQNLYALGARRIGVTSLPPIGCLPATITLFGSHSNECVASLNSDAVNFNEKLNTTSQNLQNMLPGLNLVVLDIYQPLYDLVTKPFENGFFEARKACCGTGLIETSILCNKKSIGTCANASEYVFWDGFHPSEAANKVLADDLIAAGISLIS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2409 405 Gene3D SGNH hydrolase 72 401 IPR036514 -
Ssu3g2409 405 SUPERFAMILY SGNH hydrolase 84 397 - -
Ssu3g2409 405 PANTHER GDSL-MOTIF LIPASE 65 404 - -
Ssu3g2409 405 CDD SGNH_plant_lipase_like 82 397 IPR035669 -
Ssu3g2409 405 Pfam GDSL-like Lipase/Acylhydrolase 84 395 IPR001087 GO:0016788
Ssu3g2409 405 PANTHER GDSL ESTERASE/LIPASE EXL3 65 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2409 Ssu-Chr3 75440680 75442532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2409 80 396 Acyl Lipid Metabolism Gene Families AT4G10950 34.062 1.13e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2409 - - gmx:100775618 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0642 8 10561293 10562833 Ssu3g2409 3 75440680 75442532 PCT