Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2390 ATGCAGACCCTCACTCCACCGTGCTCTAGCCCTCTCAACTATCTGAACCGCGCGCGTCACTCGGTTATTCAGGTCGGTCCGACCCGATTTTCCGTCAAATGCGGATACAGCTTCGAATCCGCGAGTTTCTCGCAAGGATTCGGCGCGAGCCGAGCTGATTGGCAAAGCTCGTGCGCCATCTTAGCCAGTAAAGTAGTTTCGCAGCAGGAGGATTCTCCCGCCGGAGCTGTCAACGGCCACAAAGCCGCCGTAACGGATCTAAACCTCGTACCTGTGAAAGTCGACGGCCACATCAAGAAGCCGCTCACGATCTCCGACCTCTCGCCGGCGCCGATGCACGGCTCGCAGCTTCGCGTGGCGTACCAAGGCGTTCCCGGCGCGTACTCGGAGGCCGCGGCGGGAAAAGCGTATCCGAACGGCGAGGCGATACCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCGGTGGAGCTCTGGATCGCCGACCGCGCGGTCCTCCCGGTGGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACgacctcctcctccgccaccgCCTCCACATCGTCGGCGAGGTACAGCTCCCGGTGCACCACTGCCTCCTCGCGCTCCCCGGCGTCCGCAAGGAGTTCCTCACGCGCGTGATCTCGCATCCGCAGGCCCTAGCACAGTGCGAGCACTCGCTCACGAAGCTCGGCCTCAACGTGGCGCGTGAGGCCGTCGACGACACCGCCGGCGCCGCCGAGTTTGTTGCCGCGAACAACCTCCGCGACACGGCCGCGATCGCGAGCGCGCGCGCGGCGGAGCTCTACGGAATGCAGGTCCTCGCGGACGGAATCCAGGACGATCCGAGCAACGTGACGCGCTTCGTGATGCTGGCGCGAGAACCGATCATTCCGCGCACCGATCGGCCGTTCAAGACGAGCATCGTGTTCGCGCACGATCAGGGAACCTCGGTGCTGTTCAAAGTGCTTTCCGCGTTTGCGTTTAGGAACATAAGCTTGACGAAGATCGAGTCCAGGCCTCACCGTAGCCGTCCGATCCGCGTCGTTGATGATGAGAGCGAGGGAACCGCGAAGCACTTTGAGTATTTGTTTTACATTGATTTCGAGGCTTCTATGGCGGAGGTCAGGGCGCAGAACGCGCTTGCTGAGGTTCAAGAATTCACGTCTTTCTTGCGAGTGTTGGGGAGTTACCCTATGGATATGACACCGTGGATCCCTTCCTCTCCTTGTCCCGGGGAAAATTGA 1251 0.6043 MQTLTPPCSSPLNYLNRARHSVIQVGPTRFSVKCGYSFESASFSQGFGASRADWQSSCAILASKVVSQQEDSPAGAVNGHKAAVTDLNLVPVKVDGHIKKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLNVAREAVDDTAGAAEFVAANNLRDTAAIASARAAELYGMQVLADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDQGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDESEGTAKHFEYLFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWIPSSPCPGEN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2390 416 CDD ACT_CM-PDT 307 400 - -
Ssu3g2390 416 ProSiteProfiles ACT domain profile. 309 400 IPR002912 -
Ssu3g2390 416 Gene3D - 202 283 - -
Ssu3g2390 416 Gene3D - 302 403 - -
Ssu3g2390 416 CDD PBP2_Ct-PDT_like 118 297 - -
Ssu3g2390 416 ProSitePatterns Prephenate dehydratase signature 2. 335 342 IPR018528 GO:0004664|GO:0009094
Ssu3g2390 416 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 21 410 - -
Ssu3g2390 416 Gene3D - 113 201 - -
Ssu3g2390 416 SUPERFAMILY Periplasmic binding protein-like II 118 301 - -
Ssu3g2390 416 SUPERFAMILY ACT-like 290 402 IPR045865 -
Ssu3g2390 416 ProSitePatterns Prephenate dehydratase signature 1. 271 293 IPR018528 GO:0004664|GO:0009094
Ssu3g2390 416 Pfam Prephenate dehydratase 119 297 IPR001086 GO:0004664|GO:0009094
Ssu3g2390 416 ProSiteProfiles Prephenate dehydratase domain profile. 118 295 IPR001086 GO:0004664|GO:0009094
Ssu3g2390 416 PANTHER AROGENATE DEHYDRATASE 21 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2390 Ssu-Chr3 75124174 75125424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2390 K05359 - gmx:100809331 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0658 8 10823288 10824400 Ssu3g2390 3 75124174 75125424 PCT