Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2385 atgagagacataGTTTCTTGCTTCAGCGAGAACGCAGTGAGCGTGTCTCACTCCTCAATCTCATGCTCCACCTACTCCAACAACGCGTGCATCTCTCCCTCCTCCATTGCACCCTCCACCCAAAACTCAATCTCCAGCGTCTACAAACTGGTCCTCTCCACGCTCAAGCAAATCCTCATCACAGTCACATGGTGTAGGAGCCACTCCAACCAAGGACTCACCGTAACCTTCAACGACGAGGACCCCGCACCCTTCAGACTCAACACCAATTCACGCTTCTTCAGGAAGAAGAAAGGCACCAAACTCCTGGAACTGGAATCTTCTTCTGACTCATCAAGGGTAGAAATCTCGTGGGATCTCTCGAGCGCCAAGTACGAAGCTGGGCCCGAACCTGTTCAAGGGTTCCACCTTGTGATCGTCATTGACTCGGAGATAGGTTTGGTTCTCGGTGACACGGCTGAAGAAATAGTTTCCAAGAGGTTCAATTCCAAAAGTAACACCCCTTTGGCCAAGGTGACGCTAATATCACGCAGAGAGCATTGTTCTGGGAGCACGCTTTACACCACCAAGGCTCAGTTCTGTGACACTGGCACGTGGCACGATGTCGTGATCCGATGCAGCACGGAGGAGGAGAATGAAGGGTTGTTCAAGTCACCGGTTTTGTGCGTGTGCATTGATAAGAAGACCGTGATTCGTGTGAAGAGGCTGCAGTGGAATTTTAGGGGGAACCAGACGATTTTCGTTGATGGGTTGCTGGTGGATTTGTTGTGGGATGTTCATGACTGGTtcttcaacccctcttcttcttcttcttcttctggtGGCTATGCGGTGTTCATGTTCAGGACTAGGAGTGGCATGGATAGCAGGCTGTGGTTGGAGGAAAAGACTGCACAGAAAGATAAAGACAGGGTTAAATTCTCCTTGTTGATCTATGCCTGTAAGACTTCATAA 954 0.4769 MRDIVSCFSENAVSVSHSSISCSTYSNNACISPSSIAPSTQNSISSVYKLVLSTLKQILITVTWCRSHSNQGLTVTFNDEDPAPFRLNTNSRFFRKKKGTKLLELESSSDSSRVEISWDLSSAKYEAGPEPVQGFHLVIVIDSEIGLVLGDTAEEIVSKRFNSKSNTPLAKVTLISRREHCSGSTLYTTKAQFCDTGTWHDVVIRCSTEEENEGLFKSPVLCVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFNPSSSSSSSGGYAVFMFRTRSGMDSRLWLEEKTAQKDKDRVKFSLLIYACKTS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2385 317 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Ssu3g2385 317 PANTHER DUF868 FAMILY PROTEIN 1 316 - -
Ssu3g2385 317 PANTHER EXPRESSED PROTEIN 1 316 IPR008586 -
Ssu3g2385 317 Pfam Plant protein of unknown function (DUF868) 39 315 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2385 Ssu-Chr3 75055163 75056116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2385 1 316 EF-hand Containing Proteins AT5G28150 35.737 1.22e-54 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2385 - - gmx:100794621 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2385 3 75055163 75056116 Ssu3g2385 3 75055163 75056116 ECH
Ssu8g0661 8 10900185 10901090 Ssu3g2385 3 75055163 75056116 PCT