Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2345 ATGGTCATGATGTTCAGATCAGTAATGGCAAGCTGTTCCTCCTCCTTCATATCAATGCTTTTGTTTCTTCTCACCATTTCGGATTTGTTTGTGAAAATCCATGGAGTTGGTTTTGGAATCAACTACGGACATATGGCCAATGATTTACCTTCTCCCTCACGAGTGGCTGTTCTTATAAAATCAATGAACGTGAGCAGGATCAAAGTCTATGACACTGATCCAAATGTTCTAATAGCCTTCTCCAATTCCAATGTGGAATTCGTTATAGTACTTGGAAATGAGTACGTAGATAACATGACAAACCCATCTAAAGCTCAAACTTGGATTCAGCAGCATGTTCAACCTTACCTTTCACAGACCAAAATCACCTGCATCACTGTGGGAAATGAGGTGTTCAATAGCAATGACACTCAGCTAATGTTGAACCTCCTCCCAGCAATGCAAACTGTACATGATGCACTTGTTAATCTTGGACTAGATCAACAAGTTACTGTCACAACCGCCCATTCTTTCAACATATTATCCAATTCCTACCCTCCTTCATCTGGGGCCTTTAGGCAAGATCTTGTGCAGTATATCCAACCCCTTCTTGACTTTCATGCTCAAATCAACTCACCTTTCCTCATCAATGCATACCCTTTCTTTGCATACAAAGACAACGCAGATGAGGTCCCCTTAAACTATGTGCTTTTTCAGCCGAACCAAGGTTCGGTTGATCCAAATACCAATTTGCATTATGACAACATGTTGTATGCTCAAATTGATGCTGTCTATGCTGCCATCAAACAAATGGGGCATACCGATATTCAAGTGAGGATTTCCGAGACTGGTTGGCCTTCTAATGGTGACCCTGAAGAGGTTGGAGCTACACCACAGAATGCAGCATTGTATAATGGTAACTTGCTCAAAAGGATAGAGCAGAAACAAGGCACTCCTGCAAATCCATCGGTTCCAATTGACATATATGTCTTTGCACTTTTTAATGAGGATTTGAAGCCTGGTAAAGCATCAGAGAGAAACTATGGCCTTTACTATCCTAATGGTACTCCAGTTTATAACATTGGATTGAAGGGTTATCTCCCACAGATGCCTATAGCAGCTAAATCCAACACTTTGTCAGTCAATTTTCTTATCTGTATAATTACATGCTTCATCTTTGCTTTGGAGCTTTCAAGATGGTGA 1182 0.4078 MVMMFRSVMASCSSSFISMLLFLLTISDLFVKIHGVGFGINYGHMANDLPSPSRVAVLIKSMNVSRIKVYDTDPNVLIAFSNSNVEFVIVLGNEYVDNMTNPSKAQTWIQQHVQPYLSQTKITCITVGNEVFNSNDTQLMLNLLPAMQTVHDALVNLGLDQQVTVTTAHSFNILSNSYPPSSGAFRQDLVQYIQPLLDFHAQINSPFLINAYPFFAYKDNADEVPLNYVLFQPNQGSVDPNTNLHYDNMLYAQIDAVYAAIKQMGHTDIQVRISETGWPSNGDPEEVGATPQNAALYNGNLLKRIEQKQGTPANPSVPIDIYVFALFNEDLKPGKASERNYGLYYPNGTPVYNIGLKGYLPQMPIAAKSNTLSVNFLICIITCFIFALELSRW 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2345 393 Gene3D Glycosidases 37 360 - -
Ssu3g2345 393 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 371 IPR044965 GO:0004553|GO:0005975
Ssu3g2345 393 Pfam Glycosyl hydrolases family 17 39 354 IPR000490 GO:0004553|GO:0005975
Ssu3g2345 393 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 14 17 371 - -
Ssu3g2345 393 SUPERFAMILY (Trans)glycosidases 38 355 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2345 Ssu-Chr3 74321015 74322761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2345 88 387 Glycoside Hydrolase AT2G27500 65.781 1.51e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2345 - - gmx:100818948 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2345 3 74321015 74322761 Ssu3g2345 3 74321015 74322761 ECH
Ssu8g0691 8 11385431 11387251 Ssu3g2345 3 74321015 74322761 PCT