Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2294 ATGTCAGCAACTTCCATGACCATgaccaacaacaacaagaaggttCAGAGCCAAGAGGAAGAGACCATGATGCCGATGCAGAAGCAGGGCATCATCACCATTCTGGACTCGAACTCAAACACAGTTTCTGCCTCTTCTCTGCGAAGGACTCTCTCCGCAGACATGTCCTCCAAGAACTGGCTCTCCCAGAACATTGCTCCTTCCGAAGAAGCACTCTTGCATGCCAACAAAACCATTGCTGACTCAGAACATGAAGAGGCCAATAAGGACCTCGAAGCTGAAAGAGAGAGGCTCGAGATTTGGAGCTCCATCCAGCGGAACAAGAAGGAGGAGCAAGAGAAATCAGGGCCGTTTGACACGTGGAGCTCAATCATATCCCTCAAGGACAAAGATGAAACCTCGAAATCGCTTCCTGTGACCCCTTATGTTCACCCTCTCGTGAAAAGGTCCAAGAGTTGTTTGAGCGAGAAGAGCCTCGAAATCTGCACTGAGAGTCTCGGATCCGAGACTGGCTCTGACGGGTTGTCGTTCTCTTCTTACTCTTCTTCCGAGACAGGGGATGCAGAGGAAGAGGAGAAAGTTGTTCTAGAACCAACTCATCAAGAAGAAGAGCCATACGACTATGCTTCGGTGGTGACTACAAAGAAGGCTTCGGCTGCACCACCACGCGCTTTCCCTCCACCACTTCCCTCACTCTCTCATCATCAAGCTTGTTCTTCTCTTCACATGCGTTCCCACCGTGACAATGGAAGGTTGGTTCTAGAAGCTGTTTCTCTTCCTTCTCACAACAATTTCCGCGTTCAGCGCCAACATGGTCGCCTTGTCCTCACTTTCTCCAATCCccaagaggaggaagaagaagaagaagaagagaataatGATAGTGGGGAGGAGTTGGAGGAAGAGTGCTGTGGAGGAGGGTTTGAGTTTGAGGAAGTCGAGGATTATGAAGAGGAAGATGAGggtgaagaggaagaggaagaggaagaggaagaataCTTTTTTGGTGGTACGAGGCCACAGGTATGTTCCACTGAAGACAATCCTGCTTTGATGGGATACGAGAGTGTGATGGAGAAAGCGCCGTTGTTGTCTAGTGGGGTGGCAAGTTTGGCTTTGATgatgaataagaataataagccAATTGGGTTGGTGAATGGGAAGCCAAAGTGGTCGGAGAAGTTCAATGAGATGACCAATTTTGAGGATGTTAATGTGGCACAATCACTGCCTCCAAGGGTGGCTAGGTTGATTCCTTCAGCACCAGCTGTGGCTGCGGCTTCCTTCAATCTCAACGCTTATGAGTACTATTGGAGGACCAAGTCTGCTACATCAAAAGGTACTAGTGTTAACCTTAACCAACTTGACCAAGAGAACCTGAAGAGCAAGGAGGTTGTGTCTGGGGACATGAACAAGGTGGTCTCAAGGGAGCAACAGCAATTGCTGGTTCTGAGAGGGAAGAATGGGGATTACTTGGTTCACAATTTGAAGAGTTGCAAGGATTCTAGAAGGTCGTTTCTGTTCTGGGAACCTTATTGCATTGCCACCTCATGA 1554 0.4537 MSATSMTMTNNNKKVQSQEEETMMPMQKQGIITILDSNSNTVSASSLRRTLSADMSSKNWLSQNIAPSEEALLHANKTIADSEHEEANKDLEAERERLEIWSSIQRNKKEEQEKSGPFDTWSSIISLKDKDETSKSLPVTPYVHPLVKRSKSCLSEKSLEICTESLGSETGSDGLSFSSYSSSETGDAEEEEKVVLEPTHQEEEPYDYASVVTTKKASAAPPRAFPPPLPSLSHHQACSSLHMRSHRDNGRLVLEAVSLPSHNNFRVQRQHGRLVLTFSNPQEEEEEEEEENNDSGEELEEECCGGGFEFEEVEDYEEEDEGEEEEEEEEEEYFFGGTRPQVCSTEDNPALMGYESVMEKAPLLSSGVASLALMMNKNNKPIGLVNGKPKWSEKFNEMTNFEDVNVAQSLPPRVARLIPSAPAVAAASFNLNAYEYYWRTKSATSKGTSVNLNQLDQENLKSKEVVSGDMNKVVSREQQQLLVLRGKNGDYLVHNLKSCKDSRRSFLFWEPYCIATS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2294 517 Coils Coil 77 97 - -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 186 204 - -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 168 184 - -
Ssu3g2294 517 Pfam Fantastic Four meristem regulator 224 278 IPR046431 -
Ssu3g2294 517 Coils Coil 313 333 - -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 281 333 - -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 278 341 - -
Ssu3g2294 517 Coils Coil 282 302 - -
Ssu3g2294 517 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 22 516 IPR021410 -
Ssu3g2294 517 MobiDBLite consensus disorder prediction 168 207 - -
Ssu3g2294 517 PANTHER PROTEIN FAF-LIKE, CHLOROPLASTIC 22 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2294 Ssu-Chr3 73226445 73227998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2294 - - gmx:100787948 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2294 3 73226445 73227998 Ssu3g2294 3 73226445 73227998 ECH
Ssu8g0736 8 12119040 12120260 Ssu3g2294 3 73226445 73227998 PCT